53 lines
1.7 KiB
Python
53 lines
1.7 KiB
Python
"""
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Vytvoří tabulku covance_samples v databázi studie.
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Spusť jednorázově pro inicializaci.
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"""
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import mysql.connector
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import db_config
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DDL = """
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CREATE TABLE IF NOT EXISTS covance_samples (
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id INT AUTO_INCREMENT PRIMARY KEY,
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import_id INT NOT NULL,
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study VARCHAR(20) NOT NULL,
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investigator_no VARCHAR(10),
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investigator_name VARCHAR(100),
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patient_no VARCHAR(20),
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collection_date DATE,
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protocol_visit_code VARCHAR(20),
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kit_receipt_date DATE,
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container_receipt_date DATE,
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accession VARCHAR(20),
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container_no TINYINT UNSIGNED,
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container_barcode VARCHAR(30),
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specimen_type VARCHAR(100),
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sample_status VARCHAR(30),
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expected_receipt_condition VARCHAR(50),
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actual_receipt_condition VARCHAR(100),
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label_line1 VARCHAR(100),
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label_line2 VARCHAR(100),
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sm_sample_status VARCHAR(50),
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smart_class_description VARCHAR(100),
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parent_barcode VARCHAR(30),
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children_barcode VARCHAR(30),
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FOREIGN KEY (import_id) REFERENCES iwrs_import(import_id),
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INDEX idx_import (import_id),
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INDEX idx_patient (patient_no),
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INDEX idx_accession (accession),
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INDEX idx_barcode (container_barcode)
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) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4;
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"""
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conn = mysql.connector.connect(
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host=db_config.DB_HOST, port=db_config.DB_PORT,
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user=db_config.DB_USER, password=db_config.DB_PASSWORD,
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database=db_config.DB_NAME,
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)
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cursor = conn.cursor()
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cursor.execute(DDL)
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conn.commit()
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cursor.close()
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conn.close()
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print("Tabulka covance_samples OK.")
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