213 lines
6.4 KiB
Python
213 lines
6.4 KiB
Python
import firebirdsql as fb,os
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import pandas as pd
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# TCP to the Firebird 2.5 server. Use the DB path as seen by the *server* (Windows path).
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conn = fb.connect(
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host="192.168.1.10",
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port=3050,
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database=r"m:\Medicus\data\MEDICUS.FDB", # raw string for backslashes
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user="SYSDBA",
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password="masterkey",
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charset="WIN1250", # adjust if needed
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)
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# Tiny helper to fetch directly into DataFrame (avoids the pandas/SQLAlchemy warning)
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def query_df(sql, params=None):
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cur = conn.cursor()
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cur.execute(sql, params or ())
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rows = cur.fetchall()
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cols = [d[0].strip() for d in cur.description] # Firebird pads column names
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return pd.DataFrame(rows, columns=cols)
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# Smoke test
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print(query_df("SELECT 1 AS ONE FROM RDB$DATABASE"))
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# Your table
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df = query_df("SELECT FIRST 100 * FROM kar")
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print(df)
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from datetime import datetime
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start = datetime(2025, 1, 1)
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end = datetime(2026, 1, 1)
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sql = """
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SELECT
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/*vh.idvh,*/
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vh.idpacient,
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kar.prijmeni,
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kar.jmeno,
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kar.rodcis,
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vh.datum,
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/*vh.idhodn,*/
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/*vd.poradi,*/
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/*vd.idmetod,*/
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/* NEW: list of matching dokladd entries within ±7 days, one cell */
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(
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SELECT LIST(CAST(dd.datose AS VARCHAR(10)) || ' ' || dd.kod, ', ')
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FROM dokladd dd
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WHERE dd.rodcis = kar.rodcis
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AND (dd.kod = '01130' or dd.kod = '01131' OR dd.kod = '01132' OR dd.kod = '01133' OR dd.kod = '01134')
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AND dd.datose BETWEEN vh.datum - 365 AND vh.datum + 365
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) AS vykodovano,
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lm.kodtext,
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lm.nazev,
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vd.vysl,
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lj.jedn,
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ls.normdol,
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ls.normhor
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FROM labvh vh
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JOIN labvd vd ON vd.idvh = vh.idvh
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JOIN kar ON kar.idpac = vh.idpacient
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JOIN labmetod lm ON lm.idmetod = vd.idmetod
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JOIN labjedn lj ON lj.idjedn = vd.idjedn
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JOIN labskaly ls ON ls.idskaly = vd.idskaly
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WHERE vh.datum >= ?
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AND vh.datum < ?
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AND lm.nazev CONTAINING 'PSA'
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/*ORDER BY kar.idpac, vh.datum, vd.poradi;*/
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ORDER BY vh.datum desc;
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"""
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df_direct = query_df(sql, (start, end))
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import re
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import numpy as np
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# --- 0) Helper: parse numeric value from string like "5,6", "<0.1", "3.2 mmol/L" ---
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num_re = re.compile(r'[-+]?\d+(?:[.,]\d+)?(?:[eE][-+]?\d+)?')
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def to_num(x):
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if x is None:
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return np.nan
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s = str(x).strip()
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if not s:
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return np.nan
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m = num_re.search(s.replace('\u00A0', ' ')) # remove NBSP if any
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if not m:
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return np.nan
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val_str = m.group(0).replace(',', '.')
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try:
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val = float(val_str)
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except ValueError:
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return np.nan
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# Heuristic for qualifiers:
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# "<x" -> take half of x (below detection limit), ">x" -> take x (at least)
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if s.lstrip().startswith('<'):
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return val * 0.5
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if s.lstrip().startswith('>'):
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return val
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return val
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# --- 1) Prepare numeric columns + ratio in pandas before export ---
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# Assumes df_direct exists with columns 'VYSL' and 'NORMHOR' (case per your SELECT)
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df_direct["VYSL_NUM"] = df_direct["VYSL"].apply(to_num)
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df_direct["NORMHOR_NUM"] = df_direct["NORMHOR"].apply(to_num)
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# Avoid division by zero/NaN
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den = df_direct["NORMHOR_NUM"].replace(0, np.nan)
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df_direct["RATIO"] = (df_direct["VYSL_NUM"] / den).clip(lower=0) # can exceed 1 if over ULN
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from datetime import datetime
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from pathlib import Path
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from openpyxl import load_workbook
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from openpyxl.utils import get_column_letter
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from openpyxl.styles import Alignment, Border, Side
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from openpyxl.formatting.rule import ColorScaleRule
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from openpyxl.styles import PatternFill
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from openpyxl.formatting.rule import FormulaRule
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base_path = Path(r"z:\Dropbox\Ordinace\Reporty")
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base_path.mkdir(parents=True, exist_ok=True)
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# ================= DELETE OLD PSA REPORTS ==================
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for fname in os.listdir(base_path):
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if fname.endswith("PSA report.xlsx"):
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try:
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os.remove(base_path / fname)
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print(f"🗑️ Deleted old PSA report: {fname}")
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except Exception as e:
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print(f"⚠️ Could not delete {fname}: {e}")
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# ================= CREATE NEW FILENAME ==================
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timestamp = datetime.now().strftime("%Y-%m-%d %H-%M-%S")
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output_file = base_path / f"{timestamp} PSA report.xlsx"
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print(f"📄 New PSA report will be saved as: {output_file}")
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# ---- 2) Export DataFrame to Excel ----
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# Assumes df_direct already exists (your joined query result)
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df_direct.to_excel(output_file, index=False, sheet_name="PSA")
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# ---- 3) Open with openpyxl for formatting ----
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wb = load_workbook(output_file)
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ws = wb["PSA"]
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# Auto width for columns
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for col in ws.columns:
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max_len = 0
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col_letter = get_column_letter(col[0].column)
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for cell in col:
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try:
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if cell.value is not None:
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max_len = max(max_len, len(str(cell.value)))
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except Exception:
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pass
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ws.column_dimensions[col_letter].width = min(max_len + 2, 50) # cap width
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# Thin border style
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thin_border = Border(
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left=Side(style="thin"),
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right=Side(style="thin"),
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top=Side(style="thin"),
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bottom=Side(style="thin"),
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)
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# Apply borders to all cells and center A, B, E
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for row in ws.iter_rows(min_row=1, max_row=ws.max_row, min_col=1, max_col=ws.max_column):
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for cell in row:
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cell.border = thin_border
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if cell.column_letter in ["A", "B", "E"]:
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cell.alignment = Alignment(horizontal="center")
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# Enable filter on header row and freeze it
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ws.auto_filter.ref = ws.dimensions
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ws.freeze_panes = "A2"
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# map headers
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hdr = {c.value: i+1 for i, c in enumerate(ws[1])}
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vysl_idx = hdr.get("VYSL")
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ratio_idx = hdr.get("RATIO")
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if not (vysl_idx and ratio_idx):
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raise RuntimeError("Missing required columns: VYSL and/or RATIO")
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vysl_col = get_column_letter(vysl_idx)
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ratio_col = get_column_letter(ratio_idx)
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max_row = ws.max_row
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rng_vysl = f"{vysl_col}2:{vysl_col}{max_row}"
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green = PatternFill(start_color="63BE7B", end_color="63BE7B", fill_type="solid")
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yellow = PatternFill(start_color="FFEB84", end_color="FFEB84", fill_type="solid")
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red = PatternFill(start_color="F8696B", end_color="F8696B", fill_type="solid")
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# Non-overlapping rules; stop when one matches
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ws.conditional_formatting.add(
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rng_vysl,
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FormulaRule(formula=[f"${ratio_col}2<=0.80"], fill=green, stopIfTrue=True)
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)
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ws.conditional_formatting.add(
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rng_vysl,
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FormulaRule(formula=[f"AND(${ratio_col}2>0.80, ${ratio_col}2<1)"], fill=yellow, stopIfTrue=True)
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)
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ws.conditional_formatting.add(
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rng_vysl,
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FormulaRule(formula=[f"${ratio_col}2>=1"], fill=red, stopIfTrue=True)
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)
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wb.save(output_file)
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print(f"Saved: {output_file}")
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