Merge remote-tracking branch 'origin/master'
# Conflicts: # 10ReadPozadavky/0704 Plne funkční uložení do mysql.py
This commit is contained in:
191
10ReadPozadavky/PRAVIDELNE_ReadPozadavkySaveMySql.py
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191
10ReadPozadavky/PRAVIDELNE_ReadPozadavkySaveMySql.py
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@@ -0,0 +1,191 @@
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#!/usr/bin/env python3
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# -*- coding: utf-8 -*-
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import pymysql
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import requests
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from pathlib import Path
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from datetime import datetime
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import time
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import time, socket
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for _ in range(30):
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try:
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socket.create_connection(("127.0.0.1", 3307), timeout=3).close()
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break
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except OSError:
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time.sleep(10)
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# ================================
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# 🔧 CONFIGURATION
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# ================================
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TOKEN_PATH = Path("token.txt")
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CLINIC_SLUG = "mudr-buzalkova"
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BATCH_SIZE = 100
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DONE_LIMIT = 200 # only last 200 DONE
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DB_CONFIG = {
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"host": "127.0.0.1",
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"port": 3307,
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"user": "root",
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"password": "Vlado9674+",
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"database": "medevio",
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"charset": "utf8mb4",
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"cursorclass": pymysql.cursors.DictCursor,
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}
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GRAPHQL_QUERY = r"""
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query ClinicRequestGrid_ListPatientRequestsForClinic2(
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$clinicSlug: String!,
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$queueId: String,
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$queueAssignment: QueueAssignmentFilter!,
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$pageInfo: PageInfo!,
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$locale: Locale!,
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$state: PatientRequestState
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) {
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requestsResponse: listPatientRequestsForClinic2(
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clinicSlug: $clinicSlug,
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queueId: $queueId,
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queueAssignment: $queueAssignment,
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pageInfo: $pageInfo,
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state: $state
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) {
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count
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patientRequests {
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id
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displayTitle(locale: $locale)
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createdAt
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updatedAt
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doneAt
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removedAt
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extendedPatient {
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name
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surname
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identificationNumber
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}
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}
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}
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}
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"""
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# ================================
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# 🔑 TOKEN
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# ================================
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def read_token(p: Path) -> str:
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tok = p.read_text(encoding="utf-8").strip()
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if tok.startswith("Bearer "):
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tok = tok.split(" ", 1)[1]
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return tok
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# ================================
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# 🕒 DATETIME CONVERSION
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# ================================
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def to_mysql_dt(iso_str):
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if not iso_str:
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return None
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try:
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dt = datetime.fromisoformat(iso_str.replace("Z", "+00:00"))
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return dt.strftime("%Y-%m-%d %H:%M:%S")
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except Exception:
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return None
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# ================================
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# 💾 UPSERT TO MYSQL
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# ================================
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def upsert(conn, r):
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p = (r.get("extendedPatient") or {})
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sql = """
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INSERT INTO pozadavky (
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id, displayTitle, createdAt, updatedAt, doneAt, removedAt,
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pacient_jmeno, pacient_prijmeni, pacient_rodnecislo
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) VALUES (%s,%s,%s,%s,%s,%s,%s,%s,%s)
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ON DUPLICATE KEY UPDATE
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displayTitle=VALUES(displayTitle),
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updatedAt=VALUES(updatedAt),
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doneAt=VALUES(doneAt),
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removedAt=VALUES(removedAt),
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pacient_jmeno=VALUES(pacient_jmeno),
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pacient_prijmeni=VALUES(pacient_prijmeni),
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pacient_rodnecislo=VALUES(pacient_rodnecislo)
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"""
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vals = (
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r.get("id"),
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r.get("displayTitle"),
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to_mysql_dt(r.get("createdAt")),
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to_mysql_dt(r.get("updatedAt")),
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to_mysql_dt(r.get("doneAt")),
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to_mysql_dt(r.get("removedAt")),
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p.get("name"),
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p.get("surname"),
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p.get("identificationNumber"),
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)
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with conn.cursor() as cur:
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cur.execute(sql, vals)
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conn.commit()
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# ================================
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|
# 📡 FETCH FUNCTION
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|
# ================================
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|
def fetch_requests(headers, state, limit=None):
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"""Fetch requests for a given state; optional limit for DONE."""
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variables = {
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"clinicSlug": CLINIC_SLUG,
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"queueId": None,
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"queueAssignment": "ANY",
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"pageInfo": {"first": limit or BATCH_SIZE, "offset": 0},
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"locale": "cs",
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"state": state,
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}
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payload = {
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"operationName": "ClinicRequestGrid_ListPatientRequestsForClinic2",
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"query": GRAPHQL_QUERY,
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"variables": variables,
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}
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r = requests.post("https://api.medevio.cz/graphql", json=payload, headers=headers)
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r.raise_for_status()
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data = r.json().get("data", {}).get("requestsResponse", {})
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return data.get("patientRequests", []), data.get("count", 0)
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|
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|
# ================================
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|
# 🧠 MAIN
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|
# ================================
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|
def main():
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|
token = read_token(TOKEN_PATH)
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headers = {
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"Authorization": f"Bearer {token}",
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"Content-Type": "application/json",
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"Accept": "application/json",
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}
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conn = pymysql.connect(**DB_CONFIG)
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print(f"\n=== Medevio požadavky sync @ {datetime.now():%Y-%m-%d %H:%M:%S} ===")
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# --- ACTIVE (all, paginated)
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|
print("\n📡 Fetching all ACTIVE requests...")
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offset = 0
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total_active = 0
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|
while True:
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requests_batch, count = fetch_requests(headers, "ACTIVE", BATCH_SIZE)
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if not requests_batch:
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break
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for r in requests_batch:
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upsert(conn, r)
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total_active += len(requests_batch)
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print(f" • {total_active} ACTIVE processed")
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|
if len(requests_batch) < BATCH_SIZE:
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|
break
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|
offset += BATCH_SIZE
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|
time.sleep(0.4)
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# --- DONE (only 200 latest)
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print("\n📡 Fetching last 200 DONE requests...")
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done_requests, done_count = fetch_requests(headers, "DONE", DONE_LIMIT)
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for r in done_requests:
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upsert(conn, r)
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print(f" ✅ DONE processed: {len(done_requests)} (of total {done_count})")
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conn.close()
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print("\n✅ Sync completed successfully.\n")
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|
if __name__ == "__main__":
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main()
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227
10ReadPozadavky/PRAVIDELNE_StahniPrilohyUlozDoMySQL.py
Normal file
227
10ReadPozadavky/PRAVIDELNE_StahniPrilohyUlozDoMySQL.py
Normal file
@@ -0,0 +1,227 @@
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|||||||
|
#!/usr/bin/env python3
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|
# -*- coding: utf-8 -*-
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|
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|
"""
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|
Download all attachments for pozadavky where attachmentsProcessed IS NULL
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|
and (optionally) createdAt is newer than a configurable cutoff date.
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|
Store them in MySQL table `medevio_downloads`, and update pozadavky.attachmentsProcessed = NOW().
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|
"""
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|
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|
import zlib
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|
import json
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|
import requests
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|
import pymysql
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|
from pathlib import Path
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|
from datetime import datetime
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|
import time
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||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 🔧 CONFIGURATION
|
||||||
|
# ==============================
|
||||||
|
TOKEN_PATH = Path("token.txt")
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||||||
|
CLINIC_SLUG = "mudr-buzalkova"
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||||||
|
|
||||||
|
DB_CONFIG = {
|
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|
"host": "127.0.0.1",
|
||||||
|
"port": 3307,
|
||||||
|
"user": "root",
|
||||||
|
"password": "Vlado9674+",
|
||||||
|
"database": "medevio",
|
||||||
|
"charset": "utf8mb4",
|
||||||
|
"cursorclass": pymysql.cursors.DictCursor,
|
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|
}
|
||||||
|
|
||||||
|
# ✅ Optional: Only process requests created after this date
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||||||
|
# Leave empty ("") to process all
|
||||||
|
CREATED_AFTER = "2024-12-01" # 🕓 Adjust freely, or set to "" for no limit
|
||||||
|
|
||||||
|
GRAPHQL_QUERY = r"""
|
||||||
|
query ClinicRequestDetail_GetPatientRequest2($requestId: UUID!) {
|
||||||
|
patientRequestMedicalRecords: listMedicalRecordsForPatientRequest(
|
||||||
|
attachmentTypes: [ECRF_FILL_ATTACHMENT, MESSAGE_ATTACHMENT, PATIENT_REQUEST_ATTACHMENT]
|
||||||
|
patientRequestId: $requestId
|
||||||
|
pageInfo: {first: 100, offset: 0}
|
||||||
|
) {
|
||||||
|
attachmentType
|
||||||
|
id
|
||||||
|
medicalRecord {
|
||||||
|
contentType
|
||||||
|
description
|
||||||
|
downloadUrl
|
||||||
|
id
|
||||||
|
url
|
||||||
|
visibleToPatient
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
"""
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 🧮 HELPERS
|
||||||
|
# ==============================
|
||||||
|
def short_crc8(uuid_str: str) -> str:
|
||||||
|
"""Return deterministic 8-char hex string from any input string (CRC32)."""
|
||||||
|
return f"{zlib.crc32(uuid_str.encode('utf-8')) & 0xffffffff:08x}"
|
||||||
|
|
||||||
|
def extract_filename_from_url(url: str) -> str:
|
||||||
|
"""Extracts filename from S3-style URL (between last '/' and first '?')."""
|
||||||
|
try:
|
||||||
|
return url.split("/")[-1].split("?")[0]
|
||||||
|
except Exception:
|
||||||
|
return "unknown_filename"
|
||||||
|
|
||||||
|
def read_token(p: Path) -> str:
|
||||||
|
"""Read Bearer token from file."""
|
||||||
|
tok = p.read_text(encoding="utf-8").strip()
|
||||||
|
if tok.startswith("Bearer "):
|
||||||
|
tok = tok.split(" ", 1)[1]
|
||||||
|
return tok
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 📡 FETCH ATTACHMENTS
|
||||||
|
# ==============================
|
||||||
|
def fetch_attachments(headers, request_id):
|
||||||
|
variables = {"requestId": request_id}
|
||||||
|
payload = {
|
||||||
|
"operationName": "ClinicRequestDetail_GetPatientRequest2",
|
||||||
|
"query": GRAPHQL_QUERY,
|
||||||
|
"variables": variables,
|
||||||
|
}
|
||||||
|
r = requests.post("https://api.medevio.cz/graphql", json=payload, headers=headers, timeout=30)
|
||||||
|
if r.status_code != 200:
|
||||||
|
print(f"❌ HTTP {r.status_code} for request {request_id}")
|
||||||
|
return []
|
||||||
|
data = r.json().get("data", {}).get("patientRequestMedicalRecords", [])
|
||||||
|
return data
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 💾 SAVE TO MYSQL (with skip)
|
||||||
|
# ==============================
|
||||||
|
def insert_download(cur, req_id, a, m, jmeno, prijmeni, created_date, existing_ids):
|
||||||
|
attachment_id = a.get("id")
|
||||||
|
if attachment_id in existing_ids:
|
||||||
|
print(f" ⏭️ Skipping already downloaded attachment {attachment_id}")
|
||||||
|
return False
|
||||||
|
|
||||||
|
url = m.get("downloadUrl")
|
||||||
|
if not url:
|
||||||
|
print(" ⚠️ No download URL")
|
||||||
|
return False
|
||||||
|
|
||||||
|
filename = extract_filename_from_url(url)
|
||||||
|
try:
|
||||||
|
r = requests.get(url, timeout=30)
|
||||||
|
r.raise_for_status()
|
||||||
|
content = r.content
|
||||||
|
except Exception as e:
|
||||||
|
print(f" ⚠️ Failed to download {url}: {e}")
|
||||||
|
return False
|
||||||
|
|
||||||
|
file_size = len(content)
|
||||||
|
attachment_type = a.get("attachmentType")
|
||||||
|
content_type = m.get("contentType")
|
||||||
|
|
||||||
|
cur.execute("""
|
||||||
|
INSERT INTO medevio_downloads (
|
||||||
|
request_id, attachment_id, attachment_type, filename,
|
||||||
|
content_type, file_size, pacient_jmeno, pacient_prijmeni,
|
||||||
|
created_at, file_content
|
||||||
|
) VALUES (%s,%s,%s,%s,%s,%s,%s,%s,%s,%s)
|
||||||
|
ON DUPLICATE KEY UPDATE
|
||||||
|
file_content = VALUES(file_content),
|
||||||
|
file_size = VALUES(file_size),
|
||||||
|
downloaded_at = NOW()
|
||||||
|
""", (
|
||||||
|
req_id,
|
||||||
|
attachment_id,
|
||||||
|
attachment_type,
|
||||||
|
filename,
|
||||||
|
content_type,
|
||||||
|
file_size,
|
||||||
|
jmeno,
|
||||||
|
prijmeni,
|
||||||
|
created_date,
|
||||||
|
content
|
||||||
|
))
|
||||||
|
existing_ids.add(attachment_id)
|
||||||
|
print(f" 💾 Saved {filename} ({file_size/1024:.1f} kB)")
|
||||||
|
return True
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 🧠 MAIN
|
||||||
|
# ==============================
|
||||||
|
def main():
|
||||||
|
token = read_token(TOKEN_PATH)
|
||||||
|
headers = {
|
||||||
|
"Authorization": f"Bearer {token}",
|
||||||
|
"Content-Type": "application/json",
|
||||||
|
"Accept": "application/json",
|
||||||
|
}
|
||||||
|
|
||||||
|
conn = pymysql.connect(**DB_CONFIG)
|
||||||
|
|
||||||
|
print("📦 Loading list of already downloaded attachments...")
|
||||||
|
with conn.cursor() as cur:
|
||||||
|
cur.execute("SELECT attachment_id FROM medevio_downloads")
|
||||||
|
existing_ids = {row["attachment_id"] for row in cur.fetchall()}
|
||||||
|
print(f"✅ Found {len(existing_ids)} attachments already saved.")
|
||||||
|
|
||||||
|
# ✅ Dynamic SQL with optional createdAt filter
|
||||||
|
sql = """
|
||||||
|
SELECT id, displayTitle, pacient_prijmeni, pacient_jmeno, createdAt
|
||||||
|
FROM pozadavky
|
||||||
|
WHERE attachmentsProcessed IS NULL
|
||||||
|
"""
|
||||||
|
params = []
|
||||||
|
if CREATED_AFTER:
|
||||||
|
sql += " AND createdAt >= %s"
|
||||||
|
params.append(CREATED_AFTER)
|
||||||
|
|
||||||
|
with conn.cursor() as cur:
|
||||||
|
cur.execute(sql, params)
|
||||||
|
rows = cur.fetchall()
|
||||||
|
|
||||||
|
print(f"📋 Found {len(rows)} pozadavky to process (attachmentsProcessed IS NULL"
|
||||||
|
+ (f", created >= {CREATED_AFTER}" if CREATED_AFTER else "") + ")")
|
||||||
|
|
||||||
|
for i, row in enumerate(rows, 1):
|
||||||
|
req_id = row["id"]
|
||||||
|
prijmeni = row.get("pacient_prijmeni") or "Neznamy"
|
||||||
|
jmeno = row.get("pacient_jmeno") or ""
|
||||||
|
created = row.get("createdAt")
|
||||||
|
|
||||||
|
try:
|
||||||
|
created_date = datetime.strptime(str(created), "%Y-%m-%d %H:%M:%S")
|
||||||
|
except Exception:
|
||||||
|
created_date = None
|
||||||
|
|
||||||
|
print(f"\n[{i}/{len(rows)}] 🧾 {prijmeni}, {jmeno} ({req_id})")
|
||||||
|
|
||||||
|
attachments = fetch_attachments(headers, req_id)
|
||||||
|
if not attachments:
|
||||||
|
print(" ⚠️ No attachments found")
|
||||||
|
with conn.cursor() as cur:
|
||||||
|
cur.execute("UPDATE pozadavky SET attachmentsProcessed = NOW() WHERE id = %s", (req_id,))
|
||||||
|
conn.commit()
|
||||||
|
continue
|
||||||
|
|
||||||
|
with conn.cursor() as cur:
|
||||||
|
for a in attachments:
|
||||||
|
m = a.get("medicalRecord") or {}
|
||||||
|
insert_download(cur, req_id, a, m, jmeno, prijmeni, created_date, existing_ids)
|
||||||
|
conn.commit()
|
||||||
|
|
||||||
|
# ✅ mark processed
|
||||||
|
with conn.cursor() as cur:
|
||||||
|
cur.execute("UPDATE pozadavky SET attachmentsProcessed = NOW() WHERE id = %s", (req_id,))
|
||||||
|
conn.commit()
|
||||||
|
|
||||||
|
print(f" ✅ {len(attachments)} attachments processed for {prijmeni}, {jmeno}")
|
||||||
|
time.sleep(0.3) # polite API delay
|
||||||
|
|
||||||
|
conn.close()
|
||||||
|
print("\n✅ Done! All new attachments processed and pozadavky updated.")
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
if __name__ == "__main__":
|
||||||
|
main()
|
||||||
101
20SaveDownloads/10 SaveToFilesystem.py
Normal file
101
20SaveDownloads/10 SaveToFilesystem.py
Normal file
@@ -0,0 +1,101 @@
|
|||||||
|
#!/usr/bin/env python3
|
||||||
|
# -*- coding: utf-8 -*-
|
||||||
|
|
||||||
|
import os
|
||||||
|
import zlib
|
||||||
|
import pymysql
|
||||||
|
import re
|
||||||
|
from pathlib import Path
|
||||||
|
from datetime import datetime
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# ⚙️ CONFIGURATION
|
||||||
|
# ==============================
|
||||||
|
DB_CONFIG = {
|
||||||
|
"host": "127.0.0.1",
|
||||||
|
"port": 3307,
|
||||||
|
"user": "root",
|
||||||
|
"password": "Vlado9674+",
|
||||||
|
"database": "medevio",
|
||||||
|
"charset": "utf8mb4",
|
||||||
|
}
|
||||||
|
|
||||||
|
BASE_DIR = Path(r"z:\Dropbox\Ordinace\Dokumentace_ke_zpracování\MP")
|
||||||
|
BASE_DIR.mkdir(parents=True, exist_ok=True)
|
||||||
|
|
||||||
|
|
||||||
|
def sanitize_name(name: str) -> str:
|
||||||
|
"""Replace invalid filename characters with underscore."""
|
||||||
|
return re.sub(r'[<>:"/\\|?*\x00-\x1F]', "_", name).strip()
|
||||||
|
|
||||||
|
|
||||||
|
# ==============================
|
||||||
|
# 📦 STREAMING EXPORT WITH TRIANGLE CHECK
|
||||||
|
# ==============================
|
||||||
|
conn = pymysql.connect(**DB_CONFIG)
|
||||||
|
cur_meta = conn.cursor(pymysql.cursors.DictCursor)
|
||||||
|
cur_blob = conn.cursor()
|
||||||
|
|
||||||
|
cur_meta.execute("""
|
||||||
|
SELECT id, request_id, attachment_id, filename, pacient_jmeno,
|
||||||
|
pacient_prijmeni, created_at, downloaded_at
|
||||||
|
FROM medevio_downloads
|
||||||
|
WHERE file_content IS NOT NULL;
|
||||||
|
""")
|
||||||
|
|
||||||
|
rows = cur_meta.fetchall()
|
||||||
|
print(f"📋 Found {len(rows)} records to check/export")
|
||||||
|
|
||||||
|
skipped, exported = 0, 0
|
||||||
|
|
||||||
|
for r in rows:
|
||||||
|
try:
|
||||||
|
created = r["created_at"] or r["downloaded_at"] or datetime.now()
|
||||||
|
date_str = created.strftime("%Y-%m-%d")
|
||||||
|
|
||||||
|
prijmeni = sanitize_name(r["pacient_prijmeni"] or "Unknown")
|
||||||
|
jmeno = sanitize_name(r["pacient_jmeno"] or "")
|
||||||
|
|
||||||
|
crc = f"{zlib.crc32(r['request_id'].encode('utf-8')) & 0xFFFFFFFF:08X}"
|
||||||
|
|
||||||
|
# Base (non-triangle) and processed (triangle) folder variants
|
||||||
|
base_folder = sanitize_name(f"{date_str} {prijmeni}, {jmeno} {crc}")
|
||||||
|
tri_folder = sanitize_name(f"{date_str}▲ {prijmeni}, {jmeno} {crc}")
|
||||||
|
|
||||||
|
base_path = BASE_DIR / base_folder
|
||||||
|
tri_path = BASE_DIR / tri_folder
|
||||||
|
|
||||||
|
filename = sanitize_name(r["filename"] or f"unknown_{r['id']}.bin")
|
||||||
|
file_path_base = base_path / filename
|
||||||
|
file_path_tri = tri_path / filename
|
||||||
|
|
||||||
|
# 🟡 Skip if exists in either version
|
||||||
|
if file_path_base.exists() or file_path_tri.exists():
|
||||||
|
skipped += 1
|
||||||
|
found_in = "▲" if file_path_tri.exists() else ""
|
||||||
|
print(f"⏭️ Skipping existing{found_in}: {filename}")
|
||||||
|
continue
|
||||||
|
|
||||||
|
# Make sure base folder exists before saving
|
||||||
|
base_path.mkdir(parents=True, exist_ok=True)
|
||||||
|
|
||||||
|
# 2️⃣ Fetch blob
|
||||||
|
cur_blob.execute("SELECT file_content FROM medevio_downloads WHERE id = %s", (r["id"],))
|
||||||
|
blob = cur_blob.fetchone()[0]
|
||||||
|
|
||||||
|
if blob:
|
||||||
|
with open(file_path_base, "wb") as f:
|
||||||
|
f.write(blob)
|
||||||
|
exported += 1
|
||||||
|
print(f"✅ Saved: {file_path_base.relative_to(BASE_DIR)}")
|
||||||
|
else:
|
||||||
|
print(f"⚠️ No content for id={r['id']}")
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
print(f"❌ Error for id={r['id']}: {e}")
|
||||||
|
|
||||||
|
cur_blob.close()
|
||||||
|
cur_meta.close()
|
||||||
|
conn.close()
|
||||||
|
|
||||||
|
print(f"\n🎯 Export complete — {exported} new files saved, {skipped} skipped.\n")
|
||||||
Reference in New Issue
Block a user