janssen/IWRS/Drugs/Working/create_shipment_report.py

import sys
import os
import mysql.connector
import openpyxl
from openpyxl.styles import Font, PatternFill, Alignment, Border, Side
from openpyxl.utils import get_column_letter
from datetime import date
import pandas as pd

# db_config.py je v nadřazeném adresáři (Drugs/)
sys.path.insert(0, os.path.join(os.path.dirname(os.path.abspath(__file__)), ".."))
import db_config

STUDY      = "77242113UCO3001"
OUTPUT_DIR = os.path.join(os.path.dirname(os.path.abspath(__file__)), "output")

os.makedirs(OUTPUT_DIR, exist_ok=True)


def get_conn():
    return mysql.connector.connect(
        host=db_config.DB_HOST, port=db_config.DB_PORT,
        user=db_config.DB_USER, password=db_config.DB_PASSWORD,
        database=db_config.DB_NAME,
    )


def load_data(study):
    conn = get_conn()
    cursor = conn.cursor(dictionary=True)

    # nejnovější import_id pro danou studii
    cursor.execute(
        "SELECT MAX(import_id) AS mid FROM iwrs_import WHERE study=%s AND report_type='drugs'",
        (study,),
    )
    row = cursor.fetchone()
    import_id = row["mid"]
    if import_id is None:
        raise RuntimeError(f"Žádná data v MySQL pro studii {study}")
    print(f"  import_id = {import_id}")

    sql = """
        SELECT
            s.shipment_id,
            s.status          AS irt_shipment_status,
            s.type,
            s.ship_from       AS shipment_from,
            s.ship_to_site    AS ship_to,
            s.request_date,
            s.received_date,
            s.received_by,
            s.expected_arrival,
            i.investigator,
            i.medication_description,
            i.medication_id,
            i.packaged_lot_no,
            i.expiration_date,
            i.item_status     AS status
        FROM iwrs_shipments s
        JOIN iwrs_shipment_items i
            ON  i.study       = s.study
            AND i.shipment_id = s.shipment_id
            AND i.import_id   = %s
        WHERE s.import_id = %s
          AND s.study     = %s
        ORDER BY s.ship_to_site, s.shipment_id, i.medication_id
    """
    cursor.execute(sql, (import_id, import_id, study))
    rows = cursor.fetchall()
    cursor.close()
    conn.close()
    print(f"  Načteno řádků: {len(rows)}")
    return rows


# shipment sloupce (modrý header) / detail sloupce (zelený header)
SHIP_COLS = [
    ("shipment_id",        "Shipment ID"),
    ("irt_shipment_status","IRT Shipment Status"),
    ("type",               "Type"),
    ("shipment_from",      "Shipment From"),
    ("ship_to",            "Ship To:"),
    ("request_date",       "Request Date"),
    ("received_date",      "Received Date"),
    ("received_by",        "Received by"),
    ("expected_arrival",   "Expected Arrival"),
]

DETAIL_COLS = [
    ("investigator",           "Investigator"),
    ("medication_description", "Medication Description"),
    ("medication_id",          "Medication ID"),
    ("packaged_lot_no",        "Packaged Lot number"),
    ("expiration_date",        "Expiration Date"),
    ("status",                 "Status"),
]

ALL_COLS    = SHIP_COLS + DETAIL_COLS
N_SHIP_COLS = len(SHIP_COLS)

HEADER_FILL_SHIP   = PatternFill("solid", fgColor="1F4E79")
HEADER_FILL_DETAIL = PatternFill("solid", fgColor="375623")
HEADER_FONT = Font(name="Arial", bold=True, color="FFFFFF", size=10)
DATA_FONT   = Font(name="Arial", size=10)
THIN_BORDER = Border(
    left=Side(style="thin", color="BFBFBF"),
    right=Side(style="thin", color="BFBFBF"),
    bottom=Side(style="thin", color="BFBFBF"),
)


def write_shipments_sheet(wb, rows):
    ws = wb.active
    ws.title = "Shipments"

    # záhlaví
    for ci, (_, label) in enumerate(ALL_COLS, 1):
        cell = ws.cell(row=1, column=ci, value=label)
        cell.font      = HEADER_FONT
        cell.fill      = HEADER_FILL_SHIP if ci <= N_SHIP_COLS else HEADER_FILL_DETAIL
        cell.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
        cell.border    = THIN_BORDER
    ws.row_dimensions[1].height = 30

    # data
    for ri, row in enumerate(rows, 2):
        for ci, (key, _) in enumerate(ALL_COLS, 1):
            val = row[key]
            cell = ws.cell(row=ri, column=ci, value=val)
            cell.font      = DATA_FONT
            cell.border    = THIN_BORDER
            cell.alignment = Alignment(horizontal="center", vertical="center")
            if isinstance(val, date):
                cell.number_format = "DD-MMM-YYYY"

    ws.auto_filter.ref = ws.dimensions
    ws.freeze_panes    = "A2"

    # šířky sloupců
    for ci, (key, label) in enumerate(ALL_COLS, 1):
        vals = [label] + [str(r[key]) for r in rows if r[key] is not None]
        ws.column_dimensions[get_column_letter(ci)].width = min(
            max((len(v) for v in vals), default=10) + 2, 35
        )


def write_summary_sheet(wb, rows):
    STATUS_COLS = ["Available", "Assigned", "Dispensed", "Returned by Subject"]

    df     = pd.DataFrame(rows)
    pivot  = df.groupby("ship_to")["status"].value_counts().unstack(fill_value=0)
    for s in STATUS_COLS:
        if s not in pivot.columns:
            pivot[s] = 0
    pivot = (
        pivot[STATUS_COLS]
        .reset_index()
        .rename(columns={"ship_to": "Site", "Returned by Subject": "Returned"})
        .sort_values("Site")
        .reset_index(drop=True)
    )
    pivot["Total"] = pivot[["Available", "Assigned", "Dispensed", "Returned"]].sum(axis=1)

    ws      = wb.create_sheet("Site Summary")
    s_cols  = ["Site", "Available", "Assigned", "Dispensed", "Returned", "Total"]

    for ci, col in enumerate(s_cols, 1):
        cell = ws.cell(row=1, column=ci, value=col)
        cell.font      = HEADER_FONT
        cell.fill      = PatternFill("solid", fgColor="1F4E79")
        cell.alignment = Alignment(horizontal="center", vertical="center")
        cell.border    = THIN_BORDER
    ws.row_dimensions[1].height = 25

    for ri, (_, row) in enumerate(pivot.iterrows(), 2):
        for ci, col in enumerate(s_cols, 1):
            cell = ws.cell(row=ri, column=ci, value=row[col])
            cell.font      = DATA_FONT
            cell.border    = THIN_BORDER
            cell.alignment = Alignment(horizontal="center", vertical="center")

    for ci, col in enumerate(s_cols, 1):
        vals = [col] + [str(pivot.iloc[r][col]) for r in range(len(pivot))]
        ws.column_dimensions[get_column_letter(ci)].width = min(
            max(len(v) for v in vals) + 4, 35
        )

    ws.freeze_panes = "A2"


def build_report():
    print(f"\nNačítám data z MySQL pro {STUDY}...")
    rows = load_data(STUDY)

    wb = openpyxl.Workbook()
    write_shipments_sheet(wb, rows)
    write_summary_sheet(wb, rows)

    outfile = os.path.join(OUTPUT_DIR, f"{date.today()} {STUDY} CZ Shipments.xlsx")
    wb.save(outfile)
    print(f"\nUloženo -> {outfile}")


build_report()