z230

Covance/create_report.py

@@ -40,6 +40,8 @@ ODD_FILL       = PatternFill("solid", fgColor="FFFFFF")
 NOTRCV_FILL    = PatternFill("solid", fgColor="FCE4D6")
 CANCELLED_FILL = PatternFill("solid", fgColor="F2F2F2")
 OPEN_FILL       = PatternFill("solid", fgColor="FFC7CE")
+OPEN_QUERY_FILL = PatternFill("solid", fgColor="FFD966")
+HYPERLINK_FONT  = Font(name="Arial", size=10, color="0563C1", underline="single")
 
 CENTER = Alignment(horizontal="center", vertical="center")
 LEFT   = Alignment(horizontal="left",   vertical="center")
@@ -84,6 +86,33 @@ def load_data():
     return pd.DataFrame(rows, columns=cols)
 
 
+def load_equery_data():
+    conn = mysql.connector.connect(
+        host=db_config.DB_HOST, port=db_config.DB_PORT,
+        user=db_config.DB_USER, password=db_config.DB_PASSWORD,
+        database=db_config.DB_NAME,
+    )
+    sql = """
+        SELECT site_code, investigator_name, subject, visit,
+               accession, visit_collection_date, equery_id,
+               create_date, response_datetime, issue_type, status,
+               time_before_response, user_name, study_role
+        FROM covance_equeries
+        WHERE import_id = (
+            SELECT MAX(import_id) FROM iwrs_import
+            WHERE study = %s AND report_type = 'covance_equeries'
+        )
+        ORDER BY site_code ASC, create_date DESC
+    """
+    cursor = conn.cursor()
+    cursor.execute(sql, (STUDY,))
+    cols = [d[0] for d in cursor.description]
+    rows = cursor.fetchall()
+    cursor.close()
+    conn.close()
+    return pd.DataFrame(rows, columns=cols)
+
+
 def load_kit_data():
     conn = mysql.connector.connect(
         host=db_config.DB_HOST, port=db_config.DB_PORT,
@@ -137,7 +166,9 @@ def write_title(ws, text, ncols):
 
 # ── sheet 1: Přehled ─────────────────────────────────────────────────────────
 
-def write_prehled(wb, df):
+def write_prehled(wb, df, accession_eq_row=None):
+    if accession_eq_row is None:
+        accession_eq_row = {}
     ws = wb.create_sheet("Přehled")
     ws.sheet_view.showGridLines = False
 
@@ -165,14 +196,22 @@ def write_prehled(wb, df):
     for r_idx, row in agg.iterrows():
         excel_row   = r_idx + 3
         has_missing = row["not_received"] > 0
-        fill = NOTRCV_FILL if has_missing else (EVEN_FILL if r_idx % 2 == 0 else ODD_FILL)
+        accession   = row["accession"]
+        eq_row      = accession_eq_row.get(accession)   # None pokud nemá Open query
+
+        if eq_row:
+            fill = OPEN_QUERY_FILL
+        elif has_missing:
+            fill = NOTRCV_FILL
+        else:
+            fill = EVEN_FILL if r_idx % 2 == 0 else ODD_FILL
 
         col_date = row["collection_date"]
         date_str = col_date.strftime("%d-%b-%Y") if hasattr(col_date, "strftime") else str(col_date)
 
         values = [
             row["investigator_no"], row["investigator_name"], row["patient_no"],
-            row["protocol_visit_code"], row["accession"], date_str,
+            row["protocol_visit_code"], accession, date_str,
             int(row["celkem"]), int(row["received"]), int(row["not_received"]),
         ]
         for c_idx, val in enumerate(values, 1):
@@ -180,7 +219,11 @@ def write_prehled(wb, df):
             cell.fill      = fill
             cell.border    = BORDER
             cell.alignment = CENTER if c_idx in (1, 4, 5, 6, 7, 8, 9) else LEFT
-            if c_idx == 9 and has_missing:
+
+            if c_idx == 5 and eq_row:
+                cell.hyperlink = f"#'eQueries'!A{eq_row}"
+                cell.font      = HYPERLINK_FONT
+            elif c_idx == 9 and has_missing:
                 cell.font = RED_FONT
             else:
                 cell.font = NORMAL_FONT
@@ -359,9 +402,66 @@ def write_kity(wb, df_kits):
     ws.freeze_panes = "A3"
 
 
-# ── sheet 4: ZDROJ (samples) ─────────────────────────────────────────────────
+# ── sheet 4: eQueries ────────────────────────────────────────────────────────
 
-# ── sheet 5: ZDROJ Kity ──────────────────────────────────────────────────────
+def write_equeries(wb, df_eq):
+    ws = wb.create_sheet("eQueries")
+    ws.sheet_view.showGridLines = False
+
+    today = datetime.date.today().strftime("%d-%b-%Y")
+    write_title(ws, f"eQueries — {STUDY}   ({today})", 14)
+
+    headers = ["Site", "Investigátor", "Pacient", "Visit", "Accession",
+               "Visit Datum", "eQuery ID", "Vytvořeno", "Odpovězeno",
+               "Issue Type", "Status", "Čas odpovědi", "Uživatel", "Role"]
+    widths  = [9, 22, 14, 26, 13, 13, 10, 16, 16, 20, 9, 13, 22, 13]
+    write_headers(ws, headers, widths)
+
+    def fmt_dt(val, fmt="%d-%b-%Y %H:%M"):
+        if val is None or (isinstance(val, float) and val != val):
+            return None
+        try:
+            if pd.isna(val):
+                return None
+        except (TypeError, ValueError):
+            pass
+        if hasattr(val, "strftime"):
+            return val.strftime(fmt)
+        return str(val)
+
+    for r_idx, row in df_eq.iterrows():
+        excel_row = r_idx + 3
+        is_open = str(row.get("status", "")).strip().lower() == "open"
+        fill = OPEN_FILL if is_open else (EVEN_FILL if r_idx % 2 == 0 else ODD_FILL)
+        font = Font(name="Arial", bold=True, size=10, color="9C0006") if is_open else NORMAL_FONT
+
+        values = [
+            row["site_code"], row["investigator_name"], row["subject"],
+            row["visit"], row["accession"],
+            fmt_dt(row["visit_collection_date"], "%d-%b-%Y"),
+            row["equery_id"],
+            fmt_dt(row["create_date"]),
+            fmt_dt(row["response_datetime"]),
+            row["issue_type"], row["status"],
+            row["time_before_response"], row["user_name"], row["study_role"],
+        ]
+        for c_idx, val in enumerate(values, 1):
+            if isinstance(val, float) and val != val:
+                val = None
+            cell = ws.cell(row=excel_row, column=c_idx, value=val)
+            cell.fill      = fill
+            cell.border    = BORDER
+            cell.font      = font
+            cell.alignment = CENTER if c_idx in (1, 6, 7, 8, 9, 11, 12) else LEFT
+        ws.row_dimensions[excel_row].height = 16
+
+    ws.freeze_panes = "A3"
+    ws.auto_filter.ref = f"A2:N{len(df_eq) + 2}"
+
+
+# ── sheet 5: ZDROJ Vzorky ────────────────────────────────────────────────────
+
+# ── sheet 6: ZDROJ Kity ──────────────────────────────────────────────────────
 
 def write_zdroj_kity(wb, df_kits):
     ws = wb.create_sheet("ZDROJ Kity")
@@ -427,6 +527,41 @@ def write_zdroj(wb, df):
     ws.auto_filter.ref = f"A1:{get_column_letter(len(headers))}1"
 
 
+def write_zdroj_equeries(wb, df_eq):
+    ws = wb.create_sheet("ZDROJ eQuery")
+    ws.sheet_view.showGridLines = True
+
+    headers = list(df_eq.columns)
+    for c, h in enumerate(headers, 1):
+        cell = ws.cell(row=1, column=c, value=h)
+        cell.font      = Font(name="Arial", bold=True, size=9, color="FFFFFF")
+        cell.fill      = PatternFill("solid", fgColor="404040")
+        cell.alignment = LEFT
+        cell.border    = BORDER
+        ws.column_dimensions[get_column_letter(c)].width = 20
+
+    for r_idx, (_, row) in enumerate(df_eq.iterrows(), 2):
+        fill = EVEN_FILL if r_idx % 2 == 0 else ODD_FILL
+        for c_idx, col in enumerate(headers, 1):
+            val = row[col]
+            try:
+                is_na = pd.isna(val)
+            except (TypeError, ValueError):
+                is_na = False
+            if is_na or val is None:
+                val = ""
+            elif hasattr(val, "strftime"):
+                val = val.strftime("%Y-%m-%d %H:%M")
+            cell = ws.cell(row=r_idx, column=c_idx, value=val)
+            cell.font      = Font(name="Arial", size=9)
+            cell.fill      = fill
+            cell.border    = BORDER
+            cell.alignment = LEFT
+
+    ws.freeze_panes = "A2"
+    ws.auto_filter.ref = f"A1:{get_column_letter(len(headers))}1"
+
+
 # ── main ─────────────────────────────────────────────────────────────────────
 
 def main():
@@ -435,20 +570,33 @@ def main():
     print("Načítám data z MySQL...")
     df      = load_data()
     df_kits = load_kit_data()
+    df_eq   = load_equery_data()
     print(f"  Vzorky:   {len(df)} řádků, {df['patient_no'].nunique()} pacientů")
     print(f"  Kity:     {len(df_kits)} kitů, {df_kits['site_code'].nunique()} center")
+    print(f"  eQueries: {len(df_eq)} záznamů ({(df_eq['status']=='Open').sum()} Open)")
+
+    # mapping accession → řádek v listu eQueries (jen Open queries, první výskyt)
+    open_accs = set(df_eq[df_eq["status"] == "Open"]["accession"].dropna())
+    accession_eq_row = {}
+    for r_idx, row in df_eq.iterrows():
+        acc = row.get("accession")
+        if acc and acc in open_accs and acc not in accession_eq_row:
+            accession_eq_row[acc] = r_idx + 3  # řádek 1=title, 2=header, data od 3
 
     wb = Workbook()
     wb.remove(wb.active)
 
-    write_prehled(wb, df)
+    write_prehled(wb, df, accession_eq_row)
     write_chybejici(wb, df)
     write_kity(wb, df_kits)
+    write_equeries(wb, df_eq)
     write_zdroj(wb, df)
     write_zdroj_kity(wb, df_kits)
+    write_zdroj_equeries(wb, df_eq)
 
-    today = datetime.date.today().strftime("%Y-%m-%d")
+    now = datetime.datetime.now()
-    out_path = unique_path(f"{today} {STUDY} Covance Samples")
+    stamp = now.strftime("%Y-%m-%d %H%M%S")
+    out_path = unique_path(f"{stamp} {STUDY} Covance")
     wb.save(out_path)
     print(f"Uloženo: {out_path}")