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Medidata/create_report_v1.0.md

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+# create_report_v1.0.md
+
+**Skript:** `create_report_v1.0.py`  
+**Verze:** 1.0  
+**Datum:** 2026-06-01
+
+## Popis
+
+Generuje Excel EDC DataListing report pro studii **77242113UCO3001** z MongoDB (db: `edc`).
+
+## Výstup
+
+`Medidata/reports/YYYY-MM-DD 77242113UCO3001 EDC DataListing v1.0.xlsx`
+
+Stará verze se automaticky přesune do `reports/TRASH/`.
+
+## Listy
+
+| List | Kolekce MongoDB | Záznamy (CZE) |
+|------|----------------|---------------|
+| DateofVisit | UCO3001.DateofVisit | 55 |
+| ConcomitantTherapy | UCO3001.ConcomitantTherapy | 91 |
+| TrialDisposition | UCO3001.TrialDispositionCompletion-Discontinuation | 3 |
+
+## Sloupce (každý list)
+
+**Pevné:** SiteNumber · SiteName · Subject · Visit · FolderSeq · RecordPos · LastModified
+
+**Dynamické:** všechny klíče z `fields{}` v pořadí výskytu v MongoDB
+
+## Formátování
+
+- Záhlaví: tmavomodrý fill, bílý tučný text, Calibri 10
+- Data: Calibri 10, tenké ohraničení
+- Zmrazení řádku 1, autofilter, šířky sloupců auto (max 55)
+- Datumy: DD-MMM-YYYY (čas jen pokud != 00:00)
+
+## Spuštění
+
+```
+cd Medidata
+python create_report_v1.0.py
+```

Medidata/create_report_v1.0.py

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+"""
+create_report_v1.0.py
+Verze: 1.0
+Datum: 2026-06-01
+Popis: Excel EDC DataListing report pro studii UCO3001 z MongoDB (db: edc).
+       Jeden list per kolekce (DateofVisit / ConcomitantTherapy / TrialDisposition).
+       Sloupce: SiteNumber, SiteName, Subject, Visit, FolderSeq, RecordPos,
+                LastModified + dynamické fields.* z MongoDB.
+       Výstup: reports/YYYY-MM-DD 77242113UCO3001 EDC DataListing v1.0.xlsx
+"""
+
+import shutil
+from datetime import datetime
+from pathlib import Path
+
+from openpyxl import Workbook
+from openpyxl.styles import Alignment, Border, Font, PatternFill, Side
+from openpyxl.utils import get_column_letter
+from pymongo import ASCENDING, MongoClient
+
+# ── Konfigurace ───────────────────────────────────────────────────────────────
+
+MONGO_URI   = "mongodb://192.168.1.76:27017"
+DB_NAME     = "edc"
+STUDY_FULL  = "77242113UCO3001"
+VERSION     = "1.0"
+
+OUTPUT_DIR  = Path(__file__).parent / "reports"
+TRASH_DIR   = OUTPUT_DIR / "TRASH"
+
+COLLECTIONS = [
+    "UCO3001.DateofVisit",
+    "UCO3001.ConcomitantTherapy",
+    "UCO3001.TrialDispositionCompletion-Discontinuation",
+]
+
+# ── Formátování ───────────────────────────────────────────────────────────────
+
+HEADER_FILL = PatternFill("solid", fgColor="1F4E79")
+HEADER_FONT = Font(bold=True, color="FFFFFF", name="Calibri", size=10)
+DATA_FONT   = Font(name="Calibri", size=10)
+THIN        = Side(style="thin", color="CCCCCC")
+BORDER      = Border(left=THIN, right=THIN, top=THIN, bottom=THIN)
+
+# ── Pevné sloupce ─────────────────────────────────────────────────────────────
+
+FIXED_COLS = [
+    ("SiteNumber",   lambda d: d.get("site", {}).get("number", "")),
+    ("SiteName",     lambda d: d.get("site", {}).get("name", "")),
+    ("Subject",      lambda d: d.get("subject", {}).get("label", "")),
+    ("Visit",        lambda d: d.get("form", {}).get("instanceName", "")),
+    ("FolderSeq",    lambda d: d.get("form", {}).get("folderSeq", "")),
+    ("RecordPos",    lambda d: d.get("form", {}).get("recordPosition", "")),
+    ("LastModified", lambda d: _fmt(d.get("lastModified", ""))),
+]
+
+
+# ── Helpers ───────────────────────────────────────────────────────────────────
+
+def _fmt(value: str) -> str:
+    """ISO datetime string → 'DD-MMM-YYYY' nebo 'DD-MMM-YYYY HH:MM'."""
+    if not value:
+        return ""
+    try:
+        dt = datetime.fromisoformat(value)
+        if dt.hour == 0 and dt.minute == 0 and dt.second == 0:
+            return dt.strftime("%d-%b-%Y")
+        return dt.strftime("%d-%b-%Y %H:%M")
+    except Exception:
+        return value
+
+
+def _fmt_field(value) -> str:
+    """Naformátuje hodnotu z fields{} — datum nebo string."""
+    if isinstance(value, str) and "T" in value and value.endswith(("+00:00", "Z")):
+        return _fmt(value)
+    return value if value is not None else ""
+
+
+COLS_LAST_CT = [
+    "CMTRT_ATC1", "CMTRT_ATC2", "CMTRT_ATC3", "CMTRT_ATC4",
+    "CMTRT_RXPREF", "CMTRT_TRADE_NAME",
+    "CMTRT_ATC1_CODE", "CMTRT_ATC2_CODE", "CMTRT_ATC3_CODE", "CMTRT_ATC4_CODE",
+    "CMTRT_RXPREF_CODE", "CMTRT_TRADE_NAME_CODE",
+]
+
+
+def _field_keys(docs: list, last: list | None = None) -> list:
+    """Vrátí seznam unikátních klíčů z fields{} — klíče v `last` přesunuty na konec."""
+    seen = set()
+    keys = []
+    for doc in docs:
+        for k in doc.get("fields", {}).keys():
+            if k not in seen:
+                seen.add(k)
+                keys.append(k)
+    if last:
+        tail = [k for k in last if k in seen]
+        keys = [k for k in keys if k not in set(tail)] + tail
+    return keys
+
+
+def _sheet_name(collection: str) -> str:
+    """UCO3001.SomeName → SomeName (max 31 znaků pro Excel)."""
+    name = collection.split(".", 1)[-1]
+    abbreviations = {
+        "TrialDispositionCompletion-Discontinuation": "TrialDisposition",
+    }
+    return abbreviations.get(name, name)[:31]
+
+
+# ── Zápis listu ───────────────────────────────────────────────────────────────
+
+def write_sheet(ws, docs: list, last_cols: list | None = None) -> None:
+    fixed_names = [c[0] for c in FIXED_COLS]
+    field_keys  = _field_keys(docs, last=last_cols)
+    all_headers = fixed_names + field_keys
+
+    # záhlaví
+    for col_i, header in enumerate(all_headers, 1):
+        cell = ws.cell(row=1, column=col_i, value=header)
+        cell.font      = HEADER_FONT
+        cell.fill      = HEADER_FILL
+        cell.border    = BORDER
+        cell.alignment = Alignment(horizontal="center", vertical="center")
+    ws.row_dimensions[1].height = 18
+    ws.freeze_panes = "A2"
+
+    # data
+    for row_i, doc in enumerate(docs, 2):
+        fields = doc.get("fields", {})
+
+        for col_i, (_, getter) in enumerate(FIXED_COLS, 1):
+            cell        = ws.cell(row=row_i, column=col_i, value=getter(doc))
+            cell.font   = DATA_FONT
+            cell.border = BORDER
+            cell.alignment = Alignment(vertical="top")
+
+        for col_off, key in enumerate(field_keys):
+            col_i       = len(FIXED_COLS) + col_off + 1
+            cell        = ws.cell(row=row_i, column=col_i, value=_fmt_field(fields.get(key, "")))
+            cell.font   = DATA_FONT
+            cell.border = BORDER
+            cell.alignment = Alignment(vertical="top")
+
+    # autofilter
+    if all_headers:
+        ws.auto_filter.ref = f"A1:{get_column_letter(len(all_headers))}1"
+
+    # šířky sloupců
+    widths = {i: len(h) for i, h in enumerate(all_headers, 1)}
+    for doc in docs:
+        fields = doc.get("fields", {})
+        for col_i, (_, getter) in enumerate(FIXED_COLS, 1):
+            widths[col_i] = max(widths[col_i], len(str(getter(doc))))
+        for col_off, key in enumerate(field_keys):
+            col_i = len(FIXED_COLS) + col_off + 1
+            widths[col_i] = max(widths[col_i], len(str(fields.get(key, ""))))
+
+    for col_i, w in widths.items():
+        ws.column_dimensions[get_column_letter(col_i)].width = min(w + 2, 55)
+
+
+# ── Main ──────────────────────────────────────────────────────────────────────
+
+def main() -> None:
+    client = MongoClient(MONGO_URI, serverSelectionTimeoutMS=5000)
+    client.admin.command("ping")
+    db = client[DB_NAME]
+
+    wb = Workbook()
+    wb.remove(wb.active)
+
+    for coll_name in COLLECTIONS:
+        docs = list(db[coll_name].find(
+            {},
+            {"_id": 0, "sourceFile": 0, "history": 0},
+            sort=[
+                ("site.number",          ASCENDING),
+                ("subject.label",        ASCENDING),
+                ("form.folderSeq",       ASCENDING),
+                ("form.recordPosition",  ASCENDING),
+            ],
+        ))
+        ws = wb.create_sheet(title=_sheet_name(coll_name))
+        last = COLS_LAST_CT if "ConcomitantTherapy" in coll_name else None
+        write_sheet(ws, docs, last_cols=last)
+        print(f"  {coll_name}: {len(docs)} zaznamu -> list '{ws.title}'")
+
+    client.close()
+
+    OUTPUT_DIR.mkdir(exist_ok=True)
+    TRASH_DIR.mkdir(exist_ok=True)
+
+    # přesun starých verzí do TRASH
+    pattern = f"* {STUDY_FULL} EDC DataListing *.xlsx"
+    for old in OUTPUT_DIR.glob(pattern):
+        dest = TRASH_DIR / old.name
+        shutil.move(str(old), str(dest))
+        print(f"  Přesunuto do TRASH: {old.name}")
+
+    today    = datetime.now().strftime("%Y-%m-%d")
+    filename = f"{today} {STUDY_FULL} EDC DataListing v{VERSION}.xlsx"
+    out_path = OUTPUT_DIR / filename
+    wb.save(str(out_path))
+    print(f"\nUloženo: {out_path}")
+
+
+if __name__ == "__main__":
+    main()