Pridani novych skriptu, reportu a zpracovanych dat

- EmailsImport: jnj_mailbox_sync_v1.0 (sync JNJ schranky) - Covance: create_lab_results_report_v1.0 + zpracovane CSV (samples/kits/equeries/test-results), browser profily - Feasibility UCO2001: store_cda_*, store_sipiq_links, classify_krok, mark_sipiq_sent, report v1.1 (stary report do TRASH) - IWRS/Drugs: pregenerovane onsite inventory / shipment reporty - TrilliumMCP server + trilium upload/diacritics skripty - .mcp.json Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-09 15:10:21 +02:00
parent f8f5d3b15d
commit 8c01fd6e1a
251 changed files with 18880 additions and 6 deletions
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+# -*- coding: utf-8 -*-
+# =============================================================================
+# Nazev:   store_cda_to_mongo_v1.0.py
+# Verze:   1.0
+# Datum:   2026-06-09
+# Popis:   Ulozi binarku dokumentu (napr. CDA PDF) do Mongo k investigatorovi
+#          (feasibility.investigators -> pole cda.data_*). Drzi se domluvy:
+#          "fyzicky dokument z e-mailu -> do Mongo".
+#          Zdroj dat = lokalni soubor (PDF uz extrahovany z .msg).
+#          Zapise: cda.data_base64, cda.data_sha256, cda.data_filename,
+#                  cda.data_mime, cda.data_size, cda.data_stored_at.
+#          Existujici cda.* (stav, datum_*, soubor, zdroj, poznamka) NEMENI.
+# Pouziti: python store_cda_to_mongo_v1.0.py            (dry-run / nahled)
+#          python store_cda_to_mongo_v1.0.py --apply     (zapise do Mongo)
+# =============================================================================
+
+import os
+import sys
+import base64
+import hashlib
+from pymongo import MongoClient
+from bson import ObjectId
+
+MONGO_URI = os.environ.get("MONGO_URI", "mongodb://192.168.1.76:27017")
+
+# --- Konfigurace konkretniho zapisu ---
+INVESTIGATOR_ID = "6a1c4275aa46d8b608065cec"   # Lukac Ludovit
+PDF_PATH = r"u:\Dropbox\!!!Days\Downloads Z230\SK_CDA_ PI_doc. MUDr. Ludovít Lukác, Ph.D._fully signed_04Jun2026.pdf"
+DATA_FILENAME = "SK_CDA_ PI_doc. MUDr. Ľudovít Lukáč, Ph.D._fully signed_04Jun2026.pdf"
+DATA_MIME = "application/pdf"
+STORED_AT = "2026-06-09"   # datum ulozeni (date nelze generovat za behu)
+
+
+def main():
+    apply = "--apply" in sys.argv
+
+    if not os.path.exists(PDF_PATH):
+        print("!!! Soubor neexistuje:", PDF_PATH)
+        return
+    with open(PDF_PATH, "rb") as f:
+        raw = f.read()
+    size = len(raw)
+    sha = hashlib.sha256(raw).hexdigest()
+    b64 = base64.b64encode(raw).decode("ascii")
+
+    client = MongoClient(MONGO_URI)
+    col = client["feasibility"]["investigators"]
+    doc = col.find_one({"_id": ObjectId(INVESTIGATOR_ID)},
+                        {"prijmeni": 1, "jmeno": 1, "cda": 1})
+    if not doc:
+        print("!!! Investigator nenalezen:", INVESTIGATOR_ID)
+        return
+
+    print("=== NAHLED ZAPISU ===")
+    print(f"Investigator: {doc.get('prijmeni')} {doc.get('jmeno')}  (_id {INVESTIGATOR_ID})")
+    cda = doc.get("cda", {}) or {}
+    print("Stavajici cda.* pole:", ", ".join(sorted(cda.keys())) or "(zadne)")
+    print("  - cda.soubor:", cda.get("soubor"))
+    print("  - cda.velikost_bytes:", cda.get("velikost_bytes"))
+    has_data = "data_base64" in cda
+    print("  - cda.data_base64 jiz existuje:", has_data)
+    print()
+    print("PRIDAM/PREPISI tato pole:")
+    print("  cda.data_filename =", DATA_FILENAME)
+    print("  cda.data_mime     =", DATA_MIME)
+    print("  cda.data_size     =", size, "B")
+    print("  cda.data_sha256   =", sha)
+    print("  cda.data_stored_at=", STORED_AT)
+    print(f"  cda.data_base64   = <base64 {len(b64)} znaku>")
+    print()
+
+    if not apply:
+        print(">>> DRY-RUN. Pro zapis spust s --apply")
+        return
+
+    res = col.update_one(
+        {"_id": ObjectId(INVESTIGATOR_ID)},
+        {"$set": {
+            "cda.data_base64": b64,
+            "cda.data_sha256": sha,
+            "cda.data_filename": DATA_FILENAME,
+            "cda.data_mime": DATA_MIME,
+            "cda.data_size": size,
+            "cda.data_stored_at": STORED_AT,
+        }},
+    )
+    print(f">>> ZAPSANO: matched={res.matched_count}, modified={res.modified_count}")
+
+
+if __name__ == "__main__":
+    main()