z230
This commit is contained in:
+23
-17
@@ -139,16 +139,16 @@ def write_prehled(wb, df):
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ws.sheet_view.showGridLines = False
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today = datetime.date.today().strftime("%d-%b-%Y")
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write_title(ws, f"Covance Samples — {STUDY} ({today})", 8)
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write_title(ws, f"Covance Samples — {STUDY} ({today})", 9)
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headers = ["Site", "Investigátor", "Pacient", "Visit", "Datum odběru",
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"Celkem", "Received", "Not Received"]
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widths = [9, 22, 14, 12, 14, 8, 10, 13]
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headers = ["Site", "Investigátor", "Pacient", "Visit", "Accession",
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"Datum odběru", "Celkem", "Received", "Not Received"]
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widths = [9, 22, 14, 12, 13, 14, 8, 10, 13]
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write_headers(ws, headers, widths)
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agg = (
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df.groupby(["investigator_no", "investigator_name",
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"patient_no", "protocol_visit_code", "collection_date"])
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"patient_no", "protocol_visit_code", "accession", "collection_date"])
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.agg(
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celkem =("sample_status", "count"),
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received =("sample_status", lambda x: (x == "Received").sum()),
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@@ -169,22 +169,22 @@ def write_prehled(wb, df):
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values = [
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row["investigator_no"], row["investigator_name"], row["patient_no"],
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row["protocol_visit_code"], date_str,
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row["protocol_visit_code"], row["accession"], date_str,
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int(row["celkem"]), int(row["received"]), int(row["not_received"]),
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]
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for c_idx, val in enumerate(values, 1):
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cell = ws.cell(row=excel_row, column=c_idx, value=val)
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cell.fill = fill
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cell.border = BORDER
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cell.alignment = CENTER if c_idx in (1, 4, 5, 6, 7, 8) else LEFT
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if c_idx == 8 and has_missing:
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cell.alignment = CENTER if c_idx in (1, 4, 5, 6, 7, 8, 9) else LEFT
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if c_idx == 9 and has_missing:
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cell.font = RED_FONT
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else:
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cell.font = NORMAL_FONT
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ws.row_dimensions[excel_row].height = 16
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ws.freeze_panes = "A3"
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ws.auto_filter.ref = f"A2:H{len(agg) + 2}"
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ws.auto_filter.ref = f"A2:I{len(agg) + 2}"
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# ── sheet 2: Chybějící ────────────────────────────────────────────────────────
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@@ -275,34 +275,35 @@ def write_kity(wb, df_kits):
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.sort_values("site_code")
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.values.tolist())
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# sloupce: A=Kit Type, B=Popis, C=≤30 dní, D=>30 dní
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# sloupce: A=Kit Type, B=Popis, C=≤30 dní, D=>30 dní, E=Celkem
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ws.column_dimensions["A"].width = 9
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ws.column_dimensions["B"].width = 28
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ws.column_dimensions["C"].width = 14
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ws.column_dimensions["D"].width = 14
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ws.column_dimensions["E"].width = 10
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write_title(ws, f"Kit Inventory — {STUDY} ({today_str})", 4)
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write_title(ws, f"Kit Inventory — {STUDY} ({today_str})", 5)
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# sub-header (řádek 2)
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# sub-header (řádek 2) — bez pevné výšky, Excel si ji sám přizpůsobí
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for col, txt in [(1, "Kit Type"), (2, "Popis"),
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(3, f"Expiruje ≤30 dní\n({cutoff.strftime('%d-%b-%Y')})"),
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(4, "Expiruje >30 dní")]:
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(4, "Expiruje >30 dní"),
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(5, "Celkem")]:
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c = ws.cell(row=2, column=col, value=txt)
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c.font = HEADER_FONT; c.fill = HEADER_FILL
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c.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
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c.border = BORDER
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ws.row_dimensions[2].height = 28
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cur_row = 3
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for site_code, investigator in sites:
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# ── site header ───────────────────────────────────────────────────────
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ws.merge_cells(f"A{cur_row}:D{cur_row}")
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ws.merge_cells(f"A{cur_row}:E{cur_row}")
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c = ws.cell(row=cur_row, column=1,
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value=f"{site_code} — {investigator}")
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c.font = SITE_HDR_FONT; c.fill = SITE_HDR_FILL
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c.alignment = LEFT; c.border = BORDER
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for col in range(2, 5):
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for col in range(2, 6):
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ws.cell(row=cur_row, column=col).fill = SITE_HDR_FILL
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ws.cell(row=cur_row, column=col).border = BORDER
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ws.row_dimensions[cur_row].height = 17
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@@ -310,7 +311,6 @@ def write_kity(wb, df_kits):
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# kity tohoto centra
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site_df = df_kits[df_kits["site_code"] == site_code].copy()
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# přepočítej expiraci od dnešního dne
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site_df["exp_date"] = pd.to_datetime(site_df["expiration_date"]).dt.date
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site_soon = 0
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@@ -324,6 +324,7 @@ def write_kity(wb, df_kits):
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lambda d: d is not None and d > cutoff)).sum())
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site_soon += soon
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site_later += later
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total = soon + later
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fill = EVEN_FILL if kt_idx % 2 == 0 else ODD_FILL
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@@ -334,16 +335,21 @@ def write_kity(wb, df_kits):
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SOON_FILL if soon else fill, CENTER, BORDER)
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_cell(ws, cur_row, 4, later if later else None,
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NORMAL_FONT, fill, CENTER, BORDER)
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_cell(ws, cur_row, 5, total if total else None,
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BOLD_FONT, fill, CENTER, BORDER)
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ws.row_dimensions[cur_row].height = 16
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cur_row += 1
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# ── součet centra ─────────────────────────────────────────────────────
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site_total = site_soon + site_later
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_cell(ws, cur_row, 1, "Celkem", BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
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_cell(ws, cur_row, 2, "", BOLD_FONT, TOTAL_FILL, LEFT, BORDER)
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_cell(ws, cur_row, 3, site_soon if site_soon else None,
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BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
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_cell(ws, cur_row, 4, site_later if site_later else None,
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BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
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_cell(ws, cur_row, 5, site_total if site_total else None,
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BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
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ws.row_dimensions[cur_row].height = 16
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cur_row += 2 # prázdný řádek mezi centry
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