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vladimir.buzalka
2026-05-05 14:21:22 +02:00
parent 5f26ff0cc5
commit 8b85e49a1f
1 changed files with 26 additions and 20 deletions
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Covance/create_report.py
+26 -20
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@@ -139,16 +139,16 @@ def write_prehled(wb, df):
ws.sheet_view.showGridLines = False ws.sheet_view.showGridLines = False
today = datetime.date.today().strftime("%d-%b-%Y") today = datetime.date.today().strftime("%d-%b-%Y")
write_title(ws, f"Covance Samples — {STUDY} ({today})", 8) write_title(ws, f"Covance Samples — {STUDY} ({today})", 9)
headers = ["Site", "Investigátor", "Pacient", "Visit", "Datum odběru", headers = ["Site", "Investigátor", "Pacient", "Visit", "Accession",
"Celkem", "Received", "Not Received"] "Datum odběru", "Celkem", "Received", "Not Received"]
widths = [9, 22, 14, 12, 14, 8, 10, 13] widths = [9, 22, 14, 12, 13, 14, 8, 10, 13]
write_headers(ws, headers, widths) write_headers(ws, headers, widths)
agg = ( agg = (
df.groupby(["investigator_no", "investigator_name", df.groupby(["investigator_no", "investigator_name",
"patient_no", "protocol_visit_code", "collection_date"]) "patient_no", "protocol_visit_code", "accession", "collection_date"])
.agg( .agg(
celkem =("sample_status", "count"), celkem =("sample_status", "count"),
received =("sample_status", lambda x: (x == "Received").sum()), received =("sample_status", lambda x: (x == "Received").sum()),
@@ -169,22 +169,22 @@ def write_prehled(wb, df):
values = [ values = [
row["investigator_no"], row["investigator_name"], row["patient_no"], row["investigator_no"], row["investigator_name"], row["patient_no"],
row["protocol_visit_code"], date_str, row["protocol_visit_code"], row["accession"], date_str,
int(row["celkem"]), int(row["received"]), int(row["not_received"]), int(row["celkem"]), int(row["received"]), int(row["not_received"]),
] ]
for c_idx, val in enumerate(values, 1): for c_idx, val in enumerate(values, 1):
cell = ws.cell(row=excel_row, column=c_idx, value=val) cell = ws.cell(row=excel_row, column=c_idx, value=val)
cell.fill = fill cell.fill = fill
cell.border = BORDER cell.border = BORDER
cell.alignment = CENTER if c_idx in (1, 4, 5, 6, 7, 8) else LEFT cell.alignment = CENTER if c_idx in (1, 4, 5, 6, 7, 8, 9) else LEFT
if c_idx == 8 and has_missing: if c_idx == 9 and has_missing:
cell.font = RED_FONT cell.font = RED_FONT
else: else:
cell.font = NORMAL_FONT cell.font = NORMAL_FONT
ws.row_dimensions[excel_row].height = 16 ws.row_dimensions[excel_row].height = 16
ws.freeze_panes = "A3" ws.freeze_panes = "A3"
ws.auto_filter.ref = f"A2:H{len(agg) + 2}" ws.auto_filter.ref = f"A2:I{len(agg) + 2}"
# ── sheet 2: Chybějící ──────────────────────────────────────────────────────── # ── sheet 2: Chybějící ────────────────────────────────────────────────────────
@@ -275,34 +275,35 @@ def write_kity(wb, df_kits):
.sort_values("site_code") .sort_values("site_code")
.values.tolist()) .values.tolist())
# sloupce: A=Kit Type, B=Popis, C=≤30 dní, D=>30 dní # sloupce: A=Kit Type, B=Popis, C=≤30 dní, D=>30 dní, E=Celkem
ws.column_dimensions["A"].width = 9 ws.column_dimensions["A"].width = 9
ws.column_dimensions["B"].width = 28 ws.column_dimensions["B"].width = 28
ws.column_dimensions["C"].width = 14 ws.column_dimensions["C"].width = 14
ws.column_dimensions["D"].width = 14 ws.column_dimensions["D"].width = 14
ws.column_dimensions["E"].width = 10
write_title(ws, f"Kit Inventory — {STUDY} ({today_str})", 4) write_title(ws, f"Kit Inventory — {STUDY} ({today_str})", 5)
# sub-header (řádek 2) # sub-header (řádek 2) — bez pevné výšky, Excel si ji sám přizpůsobí
for col, txt in [(1, "Kit Type"), (2, "Popis"), for col, txt in [(1, "Kit Type"), (2, "Popis"),
(3, f"Expiruje ≤30 dní\n({cutoff.strftime('%d-%b-%Y')})"), (3, f"Expiruje ≤30 dní\n({cutoff.strftime('%d-%b-%Y')})"),
(4, "Expiruje >30 dní")]: (4, "Expiruje >30 dní"),
(5, "Celkem")]:
c = ws.cell(row=2, column=col, value=txt) c = ws.cell(row=2, column=col, value=txt)
c.font = HEADER_FONT; c.fill = HEADER_FILL c.font = HEADER_FONT; c.fill = HEADER_FILL
c.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True) c.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
c.border = BORDER c.border = BORDER
ws.row_dimensions[2].height = 28
cur_row = 3 cur_row = 3
for site_code, investigator in sites: for site_code, investigator in sites:
# ── site header ─────────────────────────────────────────────────────── # ── site header ───────────────────────────────────────────────────────
ws.merge_cells(f"A{cur_row}:D{cur_row}") ws.merge_cells(f"A{cur_row}:E{cur_row}")
c = ws.cell(row=cur_row, column=1, c = ws.cell(row=cur_row, column=1,
value=f"{site_code} — {investigator}") value=f"{site_code} — {investigator}")
c.font = SITE_HDR_FONT; c.fill = SITE_HDR_FILL c.font = SITE_HDR_FONT; c.fill = SITE_HDR_FILL
c.alignment = LEFT; c.border = BORDER c.alignment = LEFT; c.border = BORDER
for col in range(2, 5): for col in range(2, 6):
ws.cell(row=cur_row, column=col).fill = SITE_HDR_FILL ws.cell(row=cur_row, column=col).fill = SITE_HDR_FILL
ws.cell(row=cur_row, column=col).border = BORDER ws.cell(row=cur_row, column=col).border = BORDER
ws.row_dimensions[cur_row].height = 17 ws.row_dimensions[cur_row].height = 17
@@ -310,7 +311,6 @@ def write_kity(wb, df_kits):
# kity tohoto centra # kity tohoto centra
site_df = df_kits[df_kits["site_code"] == site_code].copy() site_df = df_kits[df_kits["site_code"] == site_code].copy()
# přepočítej expiraci od dnešního dne
site_df["exp_date"] = pd.to_datetime(site_df["expiration_date"]).dt.date site_df["exp_date"] = pd.to_datetime(site_df["expiration_date"]).dt.date
site_soon = 0 site_soon = 0
@@ -324,26 +324,32 @@ def write_kity(wb, df_kits):
lambda d: d is not None and d > cutoff)).sum()) lambda d: d is not None and d > cutoff)).sum())
site_soon += soon site_soon += soon
site_later += later site_later += later
total = soon + later
fill = EVEN_FILL if kt_idx % 2 == 0 else ODD_FILL fill = EVEN_FILL if kt_idx % 2 == 0 else ODD_FILL
_cell(ws, cur_row, 1, kt, BOLD_FONT, fill, CENTER, BORDER) _cell(ws, cur_row, 1, kt, BOLD_FONT, fill, CENTER, BORDER)
_cell(ws, cur_row, 2, kt_desc.get(kt, ""), NORMAL_FONT, fill, LEFT, BORDER) _cell(ws, cur_row, 2, kt_desc.get(kt, ""), NORMAL_FONT, fill, LEFT, BORDER)
_cell(ws, cur_row, 3, soon if soon else None, _cell(ws, cur_row, 3, soon if soon else None,
RED_FONT if soon else NORMAL_FONT, RED_FONT if soon else NORMAL_FONT,
SOON_FILL if soon else fill, CENTER, BORDER) SOON_FILL if soon else fill, CENTER, BORDER)
_cell(ws, cur_row, 4, later if later else None, _cell(ws, cur_row, 4, later if later else None,
NORMAL_FONT, fill, CENTER, BORDER) NORMAL_FONT, fill, CENTER, BORDER)
_cell(ws, cur_row, 5, total if total else None,
BOLD_FONT, fill, CENTER, BORDER)
ws.row_dimensions[cur_row].height = 16 ws.row_dimensions[cur_row].height = 16
cur_row += 1 cur_row += 1
# ── součet centra ───────────────────────────────────────────────────── # ── součet centra ─────────────────────────────────────────────────────
_cell(ws, cur_row, 1, "Celkem", BOLD_FONT, TOTAL_FILL, CENTER, BORDER) site_total = site_soon + site_later
_cell(ws, cur_row, 2, "", BOLD_FONT, TOTAL_FILL, LEFT, BORDER) _cell(ws, cur_row, 1, "Celkem", BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
_cell(ws, cur_row, 2, "", BOLD_FONT, TOTAL_FILL, LEFT, BORDER)
_cell(ws, cur_row, 3, site_soon if site_soon else None, _cell(ws, cur_row, 3, site_soon if site_soon else None,
BOLD_FONT, TOTAL_FILL, CENTER, BORDER) BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
_cell(ws, cur_row, 4, site_later if site_later else None, _cell(ws, cur_row, 4, site_later if site_later else None,
BOLD_FONT, TOTAL_FILL, CENTER, BORDER) BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
_cell(ws, cur_row, 5, site_total if site_total else None,
BOLD_FONT, TOTAL_FILL, CENTER, BORDER)
ws.row_dimensions[cur_row].height = 16 ws.row_dimensions[cur_row].height = 16
cur_row += 2 # prázdný řádek mezi centry cur_row += 2 # prázdný řádek mezi centry