z230

2026-05-05 14:11:50 +02:00
parent 10eba225e7
commit 5f26ff0cc5
17 changed files with 2373 additions and 0 deletions
@@ -0,0 +1,52 @@
+"""
+Vytvoří tabulku covance_samples v databázi studie.
+Spusť jednorázově pro inicializaci.
+"""
+
+import mysql.connector
+import db_config
+
+DDL = """
+CREATE TABLE IF NOT EXISTS covance_samples (
+    id                        INT AUTO_INCREMENT PRIMARY KEY,
+    import_id                 INT NOT NULL,
+    study                     VARCHAR(20)  NOT NULL,
+    investigator_no           VARCHAR(10),
+    investigator_name         VARCHAR(100),
+    patient_no                VARCHAR(20),
+    collection_date           DATE,
+    protocol_visit_code       VARCHAR(20),
+    kit_receipt_date          DATE,
+    container_receipt_date    DATE,
+    accession                 VARCHAR(20),
+    container_no              TINYINT UNSIGNED,
+    container_barcode         VARCHAR(30),
+    specimen_type             VARCHAR(100),
+    sample_status             VARCHAR(30),
+    expected_receipt_condition VARCHAR(50),
+    actual_receipt_condition  VARCHAR(100),
+    label_line1               VARCHAR(100),
+    label_line2               VARCHAR(100),
+    sm_sample_status          VARCHAR(50),
+    smart_class_description   VARCHAR(100),
+    parent_barcode            VARCHAR(30),
+    children_barcode          VARCHAR(30),
+    FOREIGN KEY (import_id) REFERENCES iwrs_import(import_id),
+    INDEX idx_import  (import_id),
+    INDEX idx_patient (patient_no),
+    INDEX idx_accession (accession),
+    INDEX idx_barcode (container_barcode)
+) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4;
+"""
+
+conn = mysql.connector.connect(
+    host=db_config.DB_HOST, port=db_config.DB_PORT,
+    user=db_config.DB_USER, password=db_config.DB_PASSWORD,
+    database=db_config.DB_NAME,
+)
+cursor = conn.cursor()
+cursor.execute(DDL)
+conn.commit()
+cursor.close()
+conn.close()
+print("Tabulka covance_samples OK.")