z230

IWRS/Drugs/Working/create_accountability_report.py

@@ -1,3 +1,6 @@
+import sys
+import os
+import mysql.connector
 import pandas as pd
 from datetime import date
 from pathlib import Path
@@ -5,52 +8,16 @@ from openpyxl import load_workbook
 from openpyxl.styles import Font, PatternFill, Alignment, Border, Side
 from openpyxl.utils import get_column_letter
 
+sys.path.insert(0, os.path.join(os.path.dirname(os.path.abspath(__file__)), ".."))
+import db_config
+
 STUDY       = "42847922MDD3003"
-#STUDY = "77242113UCO3001"
+# STUDY     = "77242113UCO3001"
 
-INVENTORY_DIR   = Path(f"xls_reports_{STUDY}")
+BASE_DIR    = Path(os.path.dirname(os.path.abspath(__file__)))
-DESTRUCTION_DIR = Path(f"xls_ip_destruction_{STUDY}")
+OUTPUT_DIR  = BASE_DIR / "output"
-SHIPMENTS_FILE  = Path(f"xls_shipments_{STUDY}/shipments_report_{STUDY}.xlsx")
-DETAILS_DIR     = Path(f"xls_shipment_details_{STUDY}")
-OUTPUT_DIR      = Path("output")
 OUTPUT_FILE = OUTPUT_DIR / f"{date.today().strftime('%Y-%m-%d')} {STUDY} CZ IWRS overview.xlsx"
 
-SHIPMENT_DROP_COLS = {
-    "Location", "Shipped Date", "Delivered Date [UTC]",
-    "Delivery Recipient", "Delivery Details", "Cancelled Date",
-    "Tracking #", "Total Medication IDs",
-    "Shipping Category", "Study", "Destination Location", "Destination Site",
-    "Medication type", "Container ID", "Quantity of Medication IDs",
-    "Packaged Lot description",
-}
-
-# ── Shared constants ──────────────────────────────────────────────────────────
-
-COLUMN_RENAMES = {
-    "Site":                                                  "Site",
-    "Medication ID":                                         "Med ID",
-    "Packaged Lot number":                                   "Lot No.",
-    "Original Expiration Date when Packaged Lot was Added":  "Orig Exp Date",
-    "Expiration date":                                       "Exp Date",
-    "Received Date":                                         "Rcv Date",
-    "Shipment Receipt User":                                 "Rcpt User",
-    "Subject Identifier":                                    "Subject ID",
-    "Quantity Assigned":                                     "Qty Asgn",
-    "IRT Transaction":                                       "IRT Tx",
-    "Date Assigned":                                         "Date Asgn",
-    "Assignment User":                                       "Asgn User",
-    "Dispensation Status":                                   "Disp Status",
-    "Dispensing Date":                                       "Disp Date",
-    "Dispensing date":                                       "Disp Date",
-    "Quantity Dispensed":                                    "Qty Disp",
-    "Dispensing User":                                       "Disp User",
-    "Quantity Returned":                                     "Qty Ret",
-    "Date Returned":                                         "Date Ret",
-    "Return User":                                           "Ret User",
-    "DestroyedOn":                                           "Destroyed",
-    "Basket number":                                         "Basket No.",
-}
-
 DATE_COLUMNS = {
     "Orig Exp Date", "Exp Date", "Rcv Date",
     "Date Asgn", "Disp Date", "Date Ret", "Destroyed", "Max Visit Date",
@@ -81,44 +48,197 @@ COLUMN_WIDTHS = {
     "Max Visit Date": 16,
 }
 
-# ── Helpers ───────────────────────────────────────────────────────────────────
+# shipments sheet: kolík kde začínají detail sloupce (1-based, pro format_shipment_sheet)
-
+N_SHIP_COLS = 9
-def read_inventory(path):
-    df = pd.read_excel(path, header=None)
-    # Support both "Medication ID" (MDD3003) and "Medication" (UCO3001)
-    mask = df[0].isin(["Medication ID", "Medication"])
-    meta = {}
-    for i in range(len(df)):
-        val = str(df.iloc[i, 0]) if pd.notna(df.iloc[i, 0]) else ""
-        if val.startswith("Site:"):
-            meta["site"] = val.replace("Site:", "").strip()
-    if not mask.any():
-        print(f"  {path.name}: no data (skipping)")
-        return None, meta
-    header_row = df[mask].index[0]
-    data = pd.read_excel(path, header=header_row)
-    data = data.rename(columns={"Medication": "Medication ID"})
-    return data, meta
 
 
-def read_destruction_lookup():
+# ── DB ────────────────────────────────────────────────────────────────────────
-    lookup = {}
-    for path in DESTRUCTION_DIR.glob("*.xlsx"):
-        df = pd.read_excel(path, header=None)
-        basket_id = None
-        destroyed_on = None
-        for i in range(15):
-            val = str(df.iloc[i, 0]) if pd.notna(df.iloc[i, 0]) else ""
-            if val.startswith("Basket ID:"):
-                basket_id = val.replace("Basket ID:", "").strip()
-            if val.startswith("Drug Destruction Created Date:"):
-                destroyed_on = val.replace("Drug Destruction Created Date:", "").strip()
-        header_row = df[df[0] == "Medication ID Description"].index[0]
-        data = pd.read_excel(path, header=header_row)
-        for med_id in data["Medication ID"].dropna():
-            lookup[int(med_id)] = (basket_id, destroyed_on)
-    return lookup
 
+def get_conn():
+    return mysql.connector.connect(
+        host=db_config.DB_HOST, port=db_config.DB_PORT,
+        user=db_config.DB_USER, password=db_config.DB_PASSWORD,
+        database=db_config.DB_NAME,
+    )
+
+
+def get_latest_import_id(cursor, study):
+    cursor.execute(
+        "SELECT MAX(import_id) AS mid FROM iwrs_import WHERE study=%s AND report_type='drugs'",
+        (study,),
+    )
+    row = cursor.fetchone()
+    mid = row["mid"]
+    if mid is None:
+        raise RuntimeError(f"Žádná data v MySQL pro studii {study}")
+    return mid
+
+
+# ── Načítání dat z MySQL ──────────────────────────────────────────────────────
+
+def load_inventory(cursor, study, import_id):
+    """
+    Vrátí DataFrame s inventory + destruction join.
+    Sloupce jsou rovnou přejmenované pro downstream funkce.
+    """
+    sql = """
+        SELECT
+            i.site                      AS Site,
+            i.medication_id             AS `Med ID`,
+            i.packaged_lot_no           AS `Lot No.`,
+            i.original_expiration_date  AS `Orig Exp Date`,
+            i.expiration_date           AS `Exp Date`,
+            i.received_date             AS `Rcv Date`,
+            i.receipt_user              AS `Rcpt User`,
+            i.subject_identifier        AS `Subject ID`,
+            i.quantity_assigned         AS `Qty Asgn`,
+            i.irt_transaction           AS `IRT Tx`,
+            i.date_assigned             AS `Date Asgn`,
+            i.assignment_user           AS `Asgn User`,
+            i.dispensation_status       AS `Disp Status`,
+            i.dispensing_date           AS `Disp Date`,
+            i.quantity_dispensed        AS `Qty Disp`,
+            i.dispensing_user           AS `Disp User`,
+            i.quantity_returned         AS `Qty Ret`,
+            i.date_returned             AS `Date Ret`,
+            i.return_user               AS `Ret User`,
+            d.destruction_date          AS Destroyed,
+            d.basket_id                 AS `Basket No.`
+        FROM iwrs_inventory i
+        LEFT JOIN (
+            SELECT medication_id,
+                   ANY_VALUE(basket_id)        AS basket_id,
+                   ANY_VALUE(destruction_date) AS destruction_date
+            FROM iwrs_destruction
+            WHERE study = %s
+            GROUP BY medication_id
+        ) d ON d.medication_id = i.medication_id
+        WHERE i.import_id = %s
+          AND i.study     = %s
+        ORDER BY i.site, i.received_date, i.medication_id
+    """
+    cursor.execute(sql, (study, import_id, study))
+    rows = cursor.fetchall()
+    df = pd.DataFrame(rows)
+    for col in DATE_COLUMNS:
+        if col in df.columns:
+            df[col] = pd.to_datetime(df[col], errors="coerce")
+    print(f"  Inventory: {len(df)} kitu")
+    return df
+
+
+def load_shipments(cursor, study, import_id):
+    """
+    Vrátí DataFrame se spojenými shipments + items.
+    """
+    sql = """
+        SELECT
+            s.shipment_id               AS `Shipment ID`,
+            s.status                    AS `IRT Shipment Status`,
+            s.type                      AS Type,
+            s.ship_from                 AS `Shipment From`,
+            s.ship_to_site              AS `Ship To:`,
+            s.request_date              AS `Request Date`,
+            s.received_date             AS `Received Date`,
+            s.received_by               AS `Received by`,
+            s.expected_arrival          AS `Expected Arrival`,
+            i.investigator              AS Investigator,
+            i.medication_description    AS `Medication Description`,
+            i.medication_id             AS `Medication ID`,
+            i.packaged_lot_no           AS `Packaged Lot number`,
+            i.expiration_date           AS `Expiration Date`,
+            i.item_status               AS Status
+        FROM iwrs_shipments s
+        JOIN iwrs_shipment_items i
+            ON  i.study       = s.study
+            AND i.shipment_id = s.shipment_id
+            AND i.import_id   = %s
+        WHERE s.import_id = %s
+          AND s.study     = %s
+        ORDER BY s.ship_to_site, s.shipment_id, i.medication_id
+    """
+    cursor.execute(sql, (import_id, import_id, study))
+    rows = cursor.fetchall()
+    df = pd.DataFrame(rows)
+    for col in ("Request Date", "Received Date", "Expiration Date", "Expected Arrival"):
+        if col in df.columns:
+            df[col] = pd.to_datetime(df[col], errors="coerce")
+    print(f"  Shipments: {df['Shipment ID'].nunique() if len(df) else 0} zásilek, {len(df)} kitu")
+    return df
+
+
+# ── Odvozené sheety ───────────────────────────────────────────────────────────
+
+def build_site_summary(shipments_df):
+    STATUS_COLS = ["Available", "Assigned", "Dispensed", "Returned by Subject"]
+    pivot = shipments_df.groupby("Ship To:")["Status"].value_counts().unstack(fill_value=0)
+    for s in STATUS_COLS:
+        if s not in pivot.columns:
+            pivot[s] = 0
+    pivot = (
+        pivot[STATUS_COLS]
+        .reset_index()
+        .rename(columns={"Ship To:": "Site", "Returned by Subject": "Returned"})
+        .sort_values("Site")
+        .reset_index(drop=True)
+    )
+    pivot["Total"] = pivot[["Available", "Assigned", "Dispensed", "Returned"]].sum(axis=1)
+    print(f"  Site Summary: {len(pivot)} center")
+    return pivot
+
+
+def build_expired(df):
+    today = date.today()
+    mask = (
+        df["Basket No."].isna() &
+        df["Subject ID"].isna() &
+        (df["Exp Date"] < pd.Timestamp(today))
+    )
+    filtered = df[mask].copy().reset_index(drop=True)
+    sheet_name = f"Expired as of {today.strftime('%d-%b-%Y')}"
+    print(f"  Expired: {len(filtered)}")
+    return filtered, sheet_name
+
+
+def build_assigned_not_dispensed(df):
+    mask = df["Subject ID"].notna() & df["Disp Date"].isna()
+    filtered = df[mask].copy().reset_index(drop=True)
+    print(f"  Assigned not dispensed: {len(filtered)}")
+    return filtered
+
+
+def build_not_returned(df):
+    no_ret = df[
+        df["Date Ret"].isna() &
+        df["Subject ID"].notna() &
+        (df["Disp Status"].fillna("").str.upper() != "NOT DISPENSED")
+    ].copy()
+    max_asgn = df.groupby("Subject ID")["Date Asgn"].max().rename("Max Visit Date")
+    no_ret = no_ret.join(max_asgn, on="Subject ID")
+    filtered = no_ret[no_ret["Date Asgn"] < no_ret["Max Visit Date"]].copy()
+    filtered = filtered.drop(columns=["Qty Ret", "Date Ret", "Ret User", "Destroyed", "Basket No."])
+    filtered = filtered.reset_index(drop=True)
+    print(f"  Not returned: {len(filtered)}")
+    return filtered
+
+
+def build_kits_for_destruction(df):
+    mask = (
+        df["Basket No."].isna() &
+        (df["Date Ret"].notna() | (df["Disp Status"].fillna("").str.upper() == "NOT DISPENSED"))
+    )
+    filtered = (
+        df[mask]
+        .copy()
+        .sort_values(["Site", "Date Ret"], ascending=[True, True])
+        .drop(columns=["Destroyed", "Basket No."])
+        .reset_index(drop=True)
+    )
+    print(f"  Kits for destruction: {len(filtered)}")
+    return filtered
+
+
+# ── Formátování ───────────────────────────────────────────────────────────────
 
 def format_sheet(ws, header_color, highlight_col=None, highlight_color=None):
     thin        = Side(style="thin", color="000000")
@@ -155,57 +275,6 @@ def format_sheet(ws, header_color, highlight_col=None, highlight_color=None):
     ws.freeze_panes    = "A2"
 
 
-# ── Shipment helpers ─────────────────────────────────────────────────────────
-
-def build_shipments():
-    sh = pd.read_excel(SHIPMENTS_FILE, sheet_name=0, header=5)
-    sh.columns = sh.columns.str.strip()
-    sh = sh.dropna(how="all")
-    sh["Shipment ID"] = sh["Shipment ID"].astype(str).str.strip()
-    sh = sh.drop(columns=[c for c in SHIPMENT_DROP_COLS if c in sh.columns])
-    shipment_cols = list(sh.columns)
-
-    all_rows = []
-    for _, s_row in sh.iterrows():
-        sid = s_row["Shipment ID"]
-        path = DETAILS_DIR / f"shipment_details_{sid}.xlsx"
-        if not path.exists():
-            continue
-        det = pd.read_excel(path, sheet_name=0, header=5)
-        det.columns = det.columns.str.strip()
-        det = det.dropna(how="all")
-        det["Shipment"] = det["Shipment"].astype(str).str.strip()
-        extra_cols = [c for c in det.columns if c not in shipment_cols and c != "Shipment" and c not in SHIPMENT_DROP_COLS]
-        for _, d_row in det.iterrows():
-            all_rows.append({**s_row.to_dict(), **{c: d_row[c] for c in extra_cols}})
-
-    result = pd.DataFrame(all_rows)
-    all_cols = shipment_cols + [c for c in extra_cols if c in result.columns]
-    result = result[all_cols]
-
-    for col in ["Request Date", "Received Date", "Expiration Date"]:
-        if col in result.columns:
-            result[col] = pd.to_datetime(result[col], errors="coerce")
-
-    print(f"  Shipments: {result['Shipment ID'].nunique()} shipments, {len(result)} kitu")
-    return result
-
-
-def build_site_summary(result):
-    STATUS_COLS = ["Available", "Assigned", "Dispensed", "Returned by Subject"]
-    pivot = result.groupby("Ship To:")["Status"].value_counts().unstack(fill_value=0)
-    for s in STATUS_COLS:
-        if s not in pivot.columns:
-            pivot[s] = 0
-    pivot = pivot[STATUS_COLS].reset_index().rename(columns={
-        "Ship To:": "Site", "Returned by Subject": "Returned"
-    })
-    pivot = pivot.sort_values("Site").reset_index(drop=True)
-    pivot["Total"] = pivot[["Available", "Assigned", "Dispensed", "Returned"]].sum(axis=1)
-    print(f"  Site Summary: {len(pivot)} center")
-    return pivot
-
-
 def format_shipment_sheet(ws, header_color_ship, header_color_detail, n_ship_cols):
     thin        = Side(style="thin", color="000000")
     border      = Border(left=thin, right=thin, top=thin, bottom=thin)
@@ -219,7 +288,9 @@ def format_shipment_sheet(ws, header_color_ship, header_color_detail, n_ship_col
         cell.font      = hfont
         cell.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
         cell.border    = border
-        ws.column_dimensions[get_column_letter(cell.column)].width = min(len(str(cell.value or "")) + 4, 35)
+        ws.column_dimensions[get_column_letter(cell.column)].width = min(
+            len(str(cell.value or "")) + 4, 35
+        )
     ws.row_dimensions[1].height = 30
 
     for row in ws.iter_rows(min_row=2, max_row=ws.max_row):
@@ -234,101 +305,29 @@ def format_shipment_sheet(ws, header_color_ship, header_color_detail, n_ship_col
     ws.freeze_panes    = "A2"
 
 
-# ── Build DataFrames ──────────────────────────────────────────────────────────
-
-def build_main(lookup):
-    all_rows = []
-    for path in sorted(INVENTORY_DIR.glob("onsite_inventory_detail_*.xlsx")):
-        df, meta = read_inventory(path)
-        if df is None:
-            continue
-        df["DestroyedOn"]   = df["Medication ID"].apply(
-            lambda x: lookup.get(int(x), (None, None))[1] if pd.notna(x) else None)
-        df["Basket number"] = df["Medication ID"].apply(
-            lambda x: lookup.get(int(x), (None, None))[0] if pd.notna(x) else None)
-        df.insert(0, "Site", meta.get("site", path.stem))
-        all_rows.append(df)
-        print(f"  {path.name}: {len(df)} kits")
-
-    combined = pd.concat(all_rows, ignore_index=True)
-    combined.rename(columns=COLUMN_RENAMES, inplace=True)
-    for col in DATE_COLUMNS:
-        if col in combined.columns:
-            combined[col] = pd.to_datetime(combined[col], dayfirst=True, errors="coerce")
-    combined.sort_values(["Site", "Rcv Date", "Med ID"], inplace=True, ignore_index=True)
-    return combined
-
-
-def build_expired(df):
-    today = date.today()
-    mask = (
-        df["Basket No."].isna() &
-        df["Subject ID"].isna() &
-        (df["Exp Date"] < pd.Timestamp(today))
-    )
-    filtered = df[mask].copy().reset_index(drop=True)
-    sheet_name = f"Expired as of {today.strftime('%d-%b-%Y')}"
-    print(f"  Expired: {len(filtered)}")
-    return filtered, sheet_name
-
-
-def build_assigned_not_dispensed(df):
-    mask = df["Subject ID"].notna() & df["Disp Date"].isna()
-    filtered = df[mask].copy().reset_index(drop=True)
-    print(f"  Assigned not dispensed: {len(filtered)}")
-    return filtered
-
-
-def build_not_returned(df):
-    no_ret = df[
-        df["Date Ret"].isna() &
-        df["Subject ID"].notna() &
-        (df["Disp Status"].str.upper() != "NOT DISPENSED")
-    ].copy()
-    max_asgn = df.groupby("Subject ID")["Date Asgn"].max().rename("Max Visit Date")
-    no_ret = no_ret.join(max_asgn, on="Subject ID")
-    filtered = no_ret[no_ret["Date Asgn"] < no_ret["Max Visit Date"]].copy()
-    filtered = filtered.drop(columns=["Qty Ret", "Date Ret", "Ret User", "Destroyed", "Basket No."])
-    filtered = filtered.reset_index(drop=True)
-    print(f"  Not returned: {len(filtered)}")
-    return filtered
-
-
-def build_kits_for_destruction(df):
-    mask = (
-        df["Basket No."].isna() &
-        (df["Date Ret"].notna() | (df["Disp Status"].str.upper() == "NOT DISPENSED"))
-    )
-    filtered = df[mask].copy().sort_values(["Site", "Date Ret"], ascending=[True, True])
-    filtered = filtered.drop(columns=["Destroyed", "Basket No."]).reset_index(drop=True)
-    print(f"  Kits for destruction: {len(filtered)}")
-    return filtered
-
-
 # ── Main ──────────────────────────────────────────────────────────────────────
 
 def main():
-    # Prepare output dir, remove any previous overview file
     OUTPUT_DIR.mkdir(exist_ok=True)
-    for old in OUTPUT_DIR.glob(f"*{STUDY} CZ IWRS overview.xlsx"):
-        old.unlink()
-        print(f"Removed old file: {old.name}")
 
-    lookup = read_destruction_lookup()
+    print(f"\nNačítám data z MySQL pro {STUDY}...")
-    print(f"Loaded {len(lookup)} kits from destruction reports")
+    conn   = get_conn()
+    cursor = conn.cursor(dictionary=True)
+    import_id = get_latest_import_id(cursor, STUDY)
+    print(f"  import_id = {import_id}")
 
-    df = build_main(lookup)
+    df           = load_inventory(cursor, STUDY, import_id)
+    shipments_df = load_shipments(cursor, STUDY, import_id)
+
+    cursor.close()
+    conn.close()
 
     expired_df, expired_sheet = build_expired(df)
     assigned_df               = build_assigned_not_dispensed(df)
     not_returned_df           = build_not_returned(df)
     destruction_df            = build_kits_for_destruction(df)
-
-    shipments_df   = build_shipments()
     site_summary_df           = build_site_summary(shipments_df)
-    n_ship_cols    = shipments_df.columns.tolist().index("Investigator")  # first detail col index (0-based)
 
-    # Write all sheets
     with pd.ExcelWriter(OUTPUT_FILE, engine="openpyxl") as writer:
         df.to_excel(              writer, index=False, sheet_name="CountryMedicationOverview")
         expired_df.to_excel(      writer, index=False, sheet_name=expired_sheet)
@@ -338,13 +337,10 @@ def main():
         shipments_df.to_excel(    writer, index=False, sheet_name="Shipments")
         site_summary_df.to_excel( writer, index=False, sheet_name="Site Summary")
 
-    # Format all sheets
     wb = load_workbook(OUTPUT_FILE)
 
-    # Main sheet — dark blue, green highlight for Destroyed/Basket No.
     ws_main  = wb["CountryMedicationOverview"]
     format_sheet(ws_main, header_color="1F4E79")
-    # Extra: green fill for Destroyed and Basket No. columns
     new_col_fill  = PatternFill("solid", start_color="E2EFDA")
     headers_main  = [c.value for c in ws_main[1]]
     for row in ws_main.iter_rows(min_row=2, max_row=ws_main.max_row):
@@ -357,11 +353,11 @@ def main():
     format_sheet(wb["Assigned not dispensed"], header_color="833C00", highlight_col="Subject ID",    highlight_color="FFF2CC")
     format_sheet(wb["Not returned"],           header_color="375623", highlight_col="Max Visit Date", highlight_color="E2EFDA")
     format_sheet(wb["Kits for destruction"],   header_color="595959")
-    format_shipment_sheet(wb["Shipments"],    "1F4E79", "375623", n_ship_cols)
+    format_shipment_sheet(wb["Shipments"],     "1F4E79", "375623", N_SHIP_COLS)
     format_sheet(wb["Site Summary"],           header_color="1F4E79")
 
     wb.save(OUTPUT_FILE)
-    print(f"\nSaved: {OUTPUT_FILE}  ({len(df)} rows on main sheet, {wb.sheetnames})")
+    print(f"\nUloženo: {OUTPUT_FILE}  ({len(df)} řádků, sheety: {wb.sheetnames})")
 
 
 if __name__ == "__main__":

IWRS/Drugs/Working/create_shipment_report.py

@@ -1,104 +1,135 @@
-import pandas as pd
+import sys
+import os
+import mysql.connector
 import openpyxl
 from openpyxl.styles import Font, PatternFill, Alignment, Border, Side
 from openpyxl.utils import get_column_letter
 from datetime import date
-import os
+import pandas as pd
+
+# db_config.py je v nadřazeném adresáři (Drugs/)
+sys.path.insert(0, os.path.join(os.path.dirname(os.path.abspath(__file__)), ".."))
+import db_config
 
 STUDY      = "77242113UCO3001"
-SHIPMENTS_FILE = f"xls_shipments_{STUDY}/shipments_report_{STUDY}.xlsx"
+OUTPUT_DIR = os.path.join(os.path.dirname(os.path.abspath(__file__)), "output")
-DETAILS_DIR    = f"xls_shipment_details_{STUDY}"
-OUTPUT_DIR     = "output"
-TEST_SHIPMENT  = None  # None = vsechny shipments
-
-DROP_COLS = {
-    "Location", "Shipped Date", "Delivered Date [UTC]",
-    "Delivery Recipient", "Delivery Details", "Cancelled Date",
-    "Tracking #", "Total Medication IDs",
-    "Shipping Category", "Study", "Destination Location", "Destination Site",
-    "Medication type", "Container ID", "Quantity of Medication IDs",
-    "Packaged Lot description",
-}
 
 os.makedirs(OUTPUT_DIR, exist_ok=True)
 
 
-def read_shipments():
+def get_conn():
-    df = pd.read_excel(SHIPMENTS_FILE, sheet_name=0, header=5)
+    return mysql.connector.connect(
-    df.columns = df.columns.str.strip()
+        host=db_config.DB_HOST, port=db_config.DB_PORT,
-    df = df.dropna(how="all")
+        user=db_config.DB_USER, password=db_config.DB_PASSWORD,
-    df["Shipment ID"] = df["Shipment ID"].astype(str).str.strip()
+        database=db_config.DB_NAME,
-    df = df.drop(columns=[c for c in DROP_COLS if c in df.columns])
+    )
-    return df
 
 
-def read_details(shipment_id):
+def load_data(study):
-    path = os.path.join(DETAILS_DIR, f"shipment_details_{shipment_id}.xlsx")
+    conn = get_conn()
-    if not os.path.exists(path):
+    cursor = conn.cursor(dictionary=True)
-        return None
+
-    df = pd.read_excel(path, sheet_name=0, header=5)
+    # nejnovější import_id pro danou studii
-    df.columns = df.columns.str.strip()
+    cursor.execute(
-    df = df.dropna(how="all")
+        "SELECT MAX(import_id) AS mid FROM iwrs_import WHERE study=%s AND report_type='drugs'",
-    df["Shipment"] = df["Shipment"].astype(str).str.strip()
+        (study,),
-    return df
+    )
+    row = cursor.fetchone()
+    import_id = row["mid"]
+    if import_id is None:
+        raise RuntimeError(f"Žádná data v MySQL pro studii {study}")
+    print(f"  import_id = {import_id}")
+
+    sql = """
+        SELECT
+            s.shipment_id,
+            s.status          AS irt_shipment_status,
+            s.type,
+            s.ship_from       AS shipment_from,
+            s.ship_to_site    AS ship_to,
+            s.request_date,
+            s.received_date,
+            s.received_by,
+            s.expected_arrival,
+            i.investigator,
+            i.medication_description,
+            i.medication_id,
+            i.packaged_lot_no,
+            i.expiration_date,
+            i.item_status     AS status
+        FROM iwrs_shipments s
+        JOIN iwrs_shipment_items i
+            ON  i.study       = s.study
+            AND i.shipment_id = s.shipment_id
+            AND i.import_id   = %s
+        WHERE s.import_id = %s
+          AND s.study     = %s
+        ORDER BY s.ship_to_site, s.shipment_id, i.medication_id
+    """
+    cursor.execute(sql, (import_id, import_id, study))
+    rows = cursor.fetchall()
+    cursor.close()
+    conn.close()
+    print(f"  Načteno řádků: {len(rows)}")
+    return rows
 
 
-def build_report():
+# shipment sloupce (modrý header) / detail sloupce (zelený header)
-    shipments = read_shipments()
+SHIP_COLS = [
-    if TEST_SHIPMENT:
+    ("shipment_id",        "Shipment ID"),
-        shipments = shipments[shipments["Shipment ID"] == TEST_SHIPMENT]
+    ("irt_shipment_status","IRT Shipment Status"),
+    ("type",               "Type"),
+    ("shipment_from",      "Shipment From"),
+    ("ship_to",            "Ship To:"),
+    ("request_date",       "Request Date"),
+    ("received_date",      "Received Date"),
+    ("received_by",        "Received by"),
+    ("expected_arrival",   "Expected Arrival"),
+]
 
-    shipment_cols = list(shipments.columns)
+DETAIL_COLS = [
-    all_rows = []
+    ("investigator",           "Investigator"),
+    ("medication_description", "Medication Description"),
+    ("medication_id",          "Medication ID"),
+    ("packaged_lot_no",        "Packaged Lot number"),
+    ("expiration_date",        "Expiration Date"),
+    ("status",                 "Status"),
+]
 
-    for _, s_row in shipments.iterrows():
+ALL_COLS    = SHIP_COLS + DETAIL_COLS
-        sid = s_row["Shipment ID"]
+N_SHIP_COLS = len(SHIP_COLS)
-        details = read_details(sid)
-        if details is None:
-            continue
-        extra_cols = [c for c in details.columns if c not in shipment_cols and c != "Shipment" and c not in DROP_COLS]
-        for _, d_row in details.iterrows():
-            row = {**s_row.to_dict(), **{c: d_row[c] for c in extra_cols}}
-            all_rows.append(row)
-        print(f"  [{sid}] {len(details)} kitu")
 
-    result = pd.DataFrame(all_rows)
+HEADER_FILL_SHIP   = PatternFill("solid", fgColor="1F4E79")
-    all_cols = shipment_cols + [c for c in extra_cols if c in result.columns]
+HEADER_FILL_DETAIL = PatternFill("solid", fgColor="375623")
-    result = result[all_cols]
+HEADER_FONT = Font(name="Arial", bold=True, color="FFFFFF", size=10)
-
+DATA_FONT   = Font(name="Arial", size=10)
-    wb = openpyxl.Workbook()
+THIN_BORDER = Border(
-    ws = wb.active
-    ws.title = "Shipments"
-
-    HEADER_FILL_SHIP   = PatternFill("solid", fgColor="1F4E79")
-    HEADER_FILL_DETAIL = PatternFill("solid", fgColor="375623")
-    HEADER_FONT = Font(name="Arial", bold=True, color="FFFFFF", size=10)
-    DATA_FONT   = Font(name="Arial", size=10)
-    BORDER = Border(
     left=Side(style="thin", color="BFBFBF"),
     right=Side(style="thin", color="BFBFBF"),
     bottom=Side(style="thin", color="BFBFBF"),
-    )
+)
 
-    n_ship = len(shipment_cols)
+
-    for ci, col in enumerate(all_cols, 1):
+def write_shipments_sheet(wb, rows):
-        cell = ws.cell(row=1, column=ci, value=col)
+    ws = wb.active
+    ws.title = "Shipments"
+
+    # záhlaví
+    for ci, (_, label) in enumerate(ALL_COLS, 1):
+        cell = ws.cell(row=1, column=ci, value=label)
         cell.font      = HEADER_FONT
-        cell.fill = HEADER_FILL_SHIP if ci <= n_ship else HEADER_FILL_DETAIL
+        cell.fill      = HEADER_FILL_SHIP if ci <= N_SHIP_COLS else HEADER_FILL_DETAIL
         cell.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
-        cell.border = BORDER
+        cell.border    = THIN_BORDER
     ws.row_dimensions[1].height = 30
 
-    for ri, (_, row) in enumerate(result.iterrows(), 2):
+    # data
-        for ci, col in enumerate(all_cols, 1):
+    for ri, row in enumerate(rows, 2):
-            val = row[col]
+        for ci, (key, _) in enumerate(ALL_COLS, 1):
-            if pd.isna(val):
+            val = row[key]
-                val = None
-            elif hasattr(val, "date"):
-                val = val.date()
             cell = ws.cell(row=ri, column=ci, value=val)
             cell.font      = DATA_FONT
-            cell.border = BORDER
+            cell.border    = THIN_BORDER
             cell.alignment = Alignment(horizontal="center", vertical="center")
             if isinstance(val, date):
                 cell.number_format = "DD-MMM-YYYY"
@@ -106,58 +137,69 @@ def build_report():
     ws.auto_filter.ref = ws.dimensions
     ws.freeze_panes    = "A2"
 
-    for ci, col in enumerate(all_cols, 1):
+    # šířky sloupců
-        vals = [col] + [str(result.iloc[r][col]) for r in range(len(result)) if pd.notna(result.iloc[r][col])]
+    for ci, (key, label) in enumerate(ALL_COLS, 1):
-        ws.column_dimensions[get_column_letter(ci)].width = min(max((len(v) for v in vals), default=10) + 2, 35)
+        vals = [label] + [str(r[key]) for r in rows if r[key] is not None]
+        ws.column_dimensions[get_column_letter(ci)].width = min(
+            max((len(v) for v in vals), default=10) + 2, 35
+        )
 
-    # --- Sheet 2: Site Summary ---
+
+def write_summary_sheet(wb, rows):
     STATUS_COLS = ["Available", "Assigned", "Dispensed", "Returned by Subject"]
-    pivot = result.groupby("Ship To:")["Status"].value_counts().unstack(fill_value=0)
+
+    df     = pd.DataFrame(rows)
+    pivot  = df.groupby("ship_to")["status"].value_counts().unstack(fill_value=0)
     for s in STATUS_COLS:
         if s not in pivot.columns:
             pivot[s] = 0
-    pivot = pivot[STATUS_COLS].reset_index().rename(columns={"Ship To:": "Site", "Returned by Subject": "Returned"})
+    pivot = (
-    pivot = pivot.sort_values("Site").reset_index(drop=True)
+        pivot[STATUS_COLS]
+        .reset_index()
+        .rename(columns={"ship_to": "Site", "Returned by Subject": "Returned"})
+        .sort_values("Site")
+        .reset_index(drop=True)
+    )
     pivot["Total"] = pivot[["Available", "Assigned", "Dispensed", "Returned"]].sum(axis=1)
 
-    ws2 = wb.create_sheet("Site Summary")
+    ws      = wb.create_sheet("Site Summary")
-    summary_cols = ["Site", "Available", "Assigned", "Dispensed", "Returned", "Total"]
+    s_cols  = ["Site", "Available", "Assigned", "Dispensed", "Returned", "Total"]
-    HEADER_FILL_SUMM = PatternFill("solid", fgColor="1F4E79")
 
-    for ci, col in enumerate(summary_cols, 1):
+    for ci, col in enumerate(s_cols, 1):
-        cell = ws2.cell(row=1, column=ci, value=col)
+        cell = ws.cell(row=1, column=ci, value=col)
         cell.font      = HEADER_FONT
-        cell.fill = HEADER_FILL_SUMM
+        cell.fill      = PatternFill("solid", fgColor="1F4E79")
         cell.alignment = Alignment(horizontal="center", vertical="center")
-        cell.border = BORDER
+        cell.border    = THIN_BORDER
-    ws2.row_dimensions[1].height = 25
+    ws.row_dimensions[1].height = 25
 
     for ri, (_, row) in enumerate(pivot.iterrows(), 2):
-        for ci, col in enumerate(summary_cols, 1):
+        for ci, col in enumerate(s_cols, 1):
-            cell = ws2.cell(row=ri, column=ci, value=row[col])
+            cell = ws.cell(row=ri, column=ci, value=row[col])
             cell.font      = DATA_FONT
-            cell.border = BORDER
+            cell.border    = THIN_BORDER
             cell.alignment = Alignment(horizontal="center", vertical="center")
 
-    for ci, col in enumerate(summary_cols, 1):
+    for ci, col in enumerate(s_cols, 1):
         vals = [col] + [str(pivot.iloc[r][col]) for r in range(len(pivot))]
-        ws2.column_dimensions[get_column_letter(ci)].width = min(max(len(v) for v in vals) + 4, 35)
+        ws.column_dimensions[get_column_letter(ci)].width = min(
+            max(len(v) for v in vals) + 4, 35
+        )
 
-    ws2.freeze_panes = "A2"
+    ws.freeze_panes = "A2"
 
-    suffix = f"_{TEST_SHIPMENT}" if TEST_SHIPMENT else ""
-    pattern = f"{STUDY} CZ Shipments{suffix}.xlsx"
-    for old in os.listdir(OUTPUT_DIR):
-        if old.endswith(pattern):
-            try:
-                os.remove(os.path.join(OUTPUT_DIR, old))
-                print(f"Smazan -> {old}")
-            except OSError:
-                print(f"Preskakuji smazani (soubor otevren?) -> {old}")
 
-    outfile = os.path.join(OUTPUT_DIR, f"{date.today()} {STUDY} CZ Shipments{suffix}.xlsx")
+def build_report():
+    print(f"\nNačítám data z MySQL pro {STUDY}...")
+    rows = load_data(STUDY)
+
+    wb = openpyxl.Workbook()
+    write_shipments_sheet(wb, rows)
+    write_summary_sheet(wb, rows)
+
+    outfile = os.path.join(OUTPUT_DIR, f"{date.today()} {STUDY} CZ Shipments.xlsx")
     wb.save(outfile)
-    print(f"\nUlozeno -> {outfile}")
+    print(f"\nUloženo -> {outfile}")
 
 
 build_report()

IWRS/Drugs/Working/create_studie_report.py

@@ -0,0 +1,393 @@
+import sys
+import os
+import mysql.connector
+import pandas as pd
+from datetime import date
+from pathlib import Path
+from openpyxl import load_workbook
+from openpyxl.styles import Font, PatternFill, Alignment, Border, Side
+from openpyxl.utils import get_column_letter
+
+sys.path.insert(0, os.path.join(os.path.dirname(os.path.abspath(__file__)), ".."))
+import db_config
+
+STUDIES = [
+    ("77242113UCO3001", "UCO"),
+    ("42847922MDD3003", "MDD"),
+]
+
+BASE_DIR   = Path(os.path.dirname(os.path.abspath(__file__)))
+OUTPUT_DIR = BASE_DIR / "output"
+
+DATE_COLUMNS = {
+    "Orig Exp Date", "Exp Date", "Rcv Date",
+    "Date Asgn", "Disp Date", "Date Ret", "Destroyed", "Max Visit Date",
+}
+
+COLUMN_WIDTHS = {
+    "Site":           14,
+    "Med ID":         10,
+    "Lot No.":        12,
+    "Orig Exp Date":  16,
+    "Exp Date":       14,
+    "Rcv Date":       14,
+    "Rcpt User":      22,
+    "Subject ID":     14,
+    "Qty Asgn":        9,
+    "IRT Tx":          8,
+    "Date Asgn":      14,
+    "Asgn User":      20,
+    "Disp Status":    16,
+    "Disp Date":      14,
+    "Qty Disp":        9,
+    "Disp User":      20,
+    "Qty Ret":        10,
+    "Date Ret":       14,
+    "Ret User":       18,
+    "Destroyed":      14,
+    "Basket No.":     12,
+    "Max Visit Date": 16,
+}
+
+N_SHIP_COLS = 9  # počet shipment sloupců (modrý header v Shipments sheetu)
+
+
+# ── DB ────────────────────────────────────────────────────────────────────────
+
+def get_conn():
+    return mysql.connector.connect(
+        host=db_config.DB_HOST, port=db_config.DB_PORT,
+        user=db_config.DB_USER, password=db_config.DB_PASSWORD,
+        database=db_config.DB_NAME,
+    )
+
+
+def get_latest_import_id(cursor, study):
+    cursor.execute(
+        "SELECT MAX(import_id) AS mid FROM iwrs_import WHERE study=%s AND report_type='drugs'",
+        (study,),
+    )
+    row = cursor.fetchone()
+    mid = row["mid"]
+    if mid is None:
+        raise RuntimeError(f"Žádná data v MySQL pro studii {study}")
+    return mid
+
+
+# ── Načítání dat ──────────────────────────────────────────────────────────────
+
+def load_inventory(cursor, study, import_id):
+    sql = """
+        SELECT
+            i.site                      AS Site,
+            i.medication_id             AS `Med ID`,
+            i.packaged_lot_no           AS `Lot No.`,
+            i.original_expiration_date  AS `Orig Exp Date`,
+            i.expiration_date           AS `Exp Date`,
+            i.received_date             AS `Rcv Date`,
+            i.receipt_user              AS `Rcpt User`,
+            i.subject_identifier        AS `Subject ID`,
+            i.quantity_assigned         AS `Qty Asgn`,
+            i.irt_transaction           AS `IRT Tx`,
+            i.date_assigned             AS `Date Asgn`,
+            i.assignment_user           AS `Asgn User`,
+            i.dispensation_status       AS `Disp Status`,
+            i.dispensing_date           AS `Disp Date`,
+            i.quantity_dispensed        AS `Qty Disp`,
+            i.dispensing_user           AS `Disp User`,
+            i.quantity_returned         AS `Qty Ret`,
+            i.date_returned             AS `Date Ret`,
+            i.return_user               AS `Ret User`,
+            d.destruction_date          AS Destroyed,
+            d.basket_id                 AS `Basket No.`
+        FROM iwrs_inventory i
+        LEFT JOIN (
+            SELECT medication_id,
+                   ANY_VALUE(basket_id)        AS basket_id,
+                   ANY_VALUE(destruction_date) AS destruction_date
+            FROM iwrs_destruction
+            WHERE study = %s
+            GROUP BY medication_id
+        ) d ON d.medication_id = i.medication_id
+        WHERE i.import_id = %s
+          AND i.study     = %s
+        ORDER BY i.site, i.received_date, i.medication_id
+    """
+    cursor.execute(sql, (study, import_id, study))
+    rows = cursor.fetchall()
+    df = pd.DataFrame(rows)
+    for col in DATE_COLUMNS:
+        if col in df.columns:
+            df[col] = pd.to_datetime(df[col], errors="coerce")
+    print(f"  Inventory: {len(df)} kitu")
+    return df
+
+
+def load_shipments(cursor, study, import_id):
+    sql = """
+        SELECT
+            s.shipment_id               AS `Shipment ID`,
+            s.status                    AS `IRT Shipment Status`,
+            s.type                      AS Type,
+            s.ship_from                 AS `Shipment From`,
+            s.ship_to_site              AS `Ship To:`,
+            s.request_date              AS `Request Date`,
+            s.received_date             AS `Received Date`,
+            s.received_by               AS `Received by`,
+            s.expected_arrival          AS `Expected Arrival`,
+            i.investigator              AS Investigator,
+            i.medication_description    AS `Medication Description`,
+            i.medication_id             AS `Medication ID`,
+            i.packaged_lot_no           AS `Packaged Lot number`,
+            i.expiration_date           AS `Expiration Date`,
+            i.item_status               AS Status
+        FROM iwrs_shipments s
+        JOIN iwrs_shipment_items i
+            ON  i.study       = s.study
+            AND i.shipment_id = s.shipment_id
+            AND i.import_id   = %s
+        WHERE s.import_id = %s
+          AND s.study     = %s
+        ORDER BY s.ship_to_site, s.shipment_id, i.medication_id
+    """
+    cursor.execute(sql, (import_id, import_id, study))
+    rows = cursor.fetchall()
+    df = pd.DataFrame(rows)
+    for col in ("Request Date", "Received Date", "Expiration Date", "Expected Arrival"):
+        if col in df.columns:
+            df[col] = pd.to_datetime(df[col], errors="coerce")
+    n_ship = df["Shipment ID"].nunique() if len(df) else 0
+    print(f"  Shipments: {n_ship} zásilek, {len(df)} kitu")
+    return df
+
+
+# ── Odvozené sheety ───────────────────────────────────────────────────────────
+
+def build_site_summary(shipments_df):
+    STATUS_COLS = ["Available", "Assigned", "Dispensed", "Returned by Subject"]
+    pivot = shipments_df.groupby("Ship To:")["Status"].value_counts().unstack(fill_value=0)
+    for s in STATUS_COLS:
+        if s not in pivot.columns:
+            pivot[s] = 0
+    pivot = (
+        pivot[STATUS_COLS]
+        .reset_index()
+        .rename(columns={"Ship To:": "Site", "Returned by Subject": "Returned"})
+        .sort_values("Site")
+        .reset_index(drop=True)
+    )
+    pivot["Total"] = pivot[["Available", "Assigned", "Dispensed", "Returned"]].sum(axis=1)
+    print(f"  Site Summary: {len(pivot)} center")
+    return pivot
+
+
+def build_expired(df):
+    today = date.today()
+    mask = (
+        df["Basket No."].isna() &
+        df["Subject ID"].isna() &
+        (df["Exp Date"] < pd.Timestamp(today))
+    )
+    filtered = df[mask].copy().reset_index(drop=True)
+    print(f"  Expired: {len(filtered)}")
+    return filtered
+
+
+def build_assigned_not_dispensed(df):
+    mask = df["Subject ID"].notna() & df["Disp Date"].isna()
+    filtered = df[mask].copy().reset_index(drop=True)
+    print(f"  Assigned not dispensed: {len(filtered)}")
+    return filtered
+
+
+def build_not_returned(df):
+    no_ret = df[
+        df["Date Ret"].isna() &
+        df["Subject ID"].notna() &
+        (df["Disp Status"].fillna("").str.upper() != "NOT DISPENSED")
+    ].copy()
+    max_asgn = df.groupby("Subject ID")["Date Asgn"].max().rename("Max Visit Date")
+    no_ret = no_ret.join(max_asgn, on="Subject ID")
+    filtered = no_ret[no_ret["Date Asgn"] < no_ret["Max Visit Date"]].copy()
+    filtered = filtered.drop(columns=["Qty Ret", "Date Ret", "Ret User", "Destroyed", "Basket No."])
+    filtered = filtered.reset_index(drop=True)
+    print(f"  Not returned: {len(filtered)}")
+    return filtered
+
+
+def build_kits_for_destruction(df):
+    mask = (
+        df["Basket No."].isna() &
+        (df["Date Ret"].notna() | (df["Disp Status"].fillna("").str.upper() == "NOT DISPENSED"))
+    )
+    filtered = (
+        df[mask]
+        .copy()
+        .sort_values(["Site", "Date Ret"], ascending=[True, True])
+        .drop(columns=["Destroyed", "Basket No."])
+        .reset_index(drop=True)
+    )
+    print(f"  Kits for destruction: {len(filtered)}")
+    return filtered
+
+
+# ── Formátování ───────────────────────────────────────────────────────────────
+
+def format_sheet(ws, header_color, highlight_col=None, highlight_color=None):
+    thin        = Side(style="thin", color="000000")
+    border      = Border(left=thin, right=thin, top=thin, bottom=thin)
+    header_fill = PatternFill("solid", start_color=header_color)
+    header_font = Font(bold=True, color="FFFFFF", name="Arial", size=10)
+    row_font    = Font(name="Arial", size=10)
+    hi_fill     = PatternFill("solid", start_color=highlight_color) if highlight_color else None
+
+    headers = [cell.value for cell in ws[1]]
+
+    for cell in ws[1]:
+        cell.fill      = header_fill
+        cell.font      = header_font
+        cell.alignment = Alignment(horizontal="center", vertical="center", wrap_text=False)
+        cell.border    = border
+
+    for row in ws.iter_rows(min_row=2, max_row=ws.max_row):
+        for cell in row:
+            col_name = headers[cell.column - 1] if cell.column <= len(headers) else None
+            cell.font      = row_font
+            cell.border    = border
+            cell.alignment = Alignment(horizontal="center")
+            if col_name in DATE_COLUMNS:
+                cell.number_format = "DD-MMM-YYYY"
+            if hi_fill and col_name == highlight_col:
+                cell.fill = hi_fill
+
+    for cell in ws[1]:
+        width = COLUMN_WIDTHS.get(cell.value, 14)
+        ws.column_dimensions[get_column_letter(cell.column)].width = width
+
+    ws.auto_filter.ref = ws.dimensions
+    ws.freeze_panes    = "A2"
+
+
+def format_overview_sheet(ws):
+    format_sheet(ws, header_color="1F4E79")
+    new_col_fill = PatternFill("solid", start_color="E2EFDA")
+    headers = [c.value for c in ws[1]]
+    for row in ws.iter_rows(min_row=2, max_row=ws.max_row):
+        for cell in row:
+            col_name = headers[cell.column - 1] if cell.column <= len(headers) else None
+            if col_name in ("Destroyed", "Basket No."):
+                cell.fill = new_col_fill
+
+
+def format_shipment_sheet(ws):
+    thin        = Side(style="thin", color="000000")
+    border      = Border(left=thin, right=thin, top=thin, bottom=thin)
+    hfont       = Font(bold=True, color="FFFFFF", name="Arial", size=10)
+    dfont       = Font(name="Arial", size=10)
+    fill_ship   = PatternFill("solid", start_color="1F4E79")
+    fill_detail = PatternFill("solid", start_color="375623")
+
+    for cell in ws[1]:
+        cell.fill      = fill_ship if cell.column <= N_SHIP_COLS else fill_detail
+        cell.font      = hfont
+        cell.alignment = Alignment(horizontal="center", vertical="center", wrap_text=True)
+        cell.border    = border
+        ws.column_dimensions[get_column_letter(cell.column)].width = min(
+            len(str(cell.value or "")) + 4, 35
+        )
+    ws.row_dimensions[1].height = 30
+
+    for row in ws.iter_rows(min_row=2, max_row=ws.max_row):
+        for cell in row:
+            cell.font      = dfont
+            cell.border    = border
+            cell.alignment = Alignment(horizontal="center", vertical="center")
+            if cell.value.__class__.__name__ in ("datetime", "date", "Timestamp"):
+                cell.number_format = "DD-MMM-YYYY"
+
+    ws.auto_filter.ref = ws.dimensions
+    ws.freeze_panes    = "A2"
+
+
+# ── Main ──────────────────────────────────────────────────────────────────────
+
+SHEETS_DEF = [
+    ("CountryMedicationOverview", "overview"),
+    ("Expired",                   "expired"),
+    ("Assigned not dispensed",    "assigned"),
+    ("Not returned",              "not_returned"),
+    ("Kits for destruction",      "destruction"),
+    ("Shipments",                 "shipments"),
+    ("Site Summary",              "site_summary"),
+]
+
+FORMAT_MAP = {
+    "overview":     lambda ws: format_overview_sheet(ws),
+    "expired":      lambda ws: format_sheet(ws, "C00000", "Exp Date",       "FFE0E0"),
+    "assigned":     lambda ws: format_sheet(ws, "833C00", "Subject ID",     "FFF2CC"),
+    "not_returned": lambda ws: format_sheet(ws, "375623", "Max Visit Date", "E2EFDA"),
+    "destruction":  lambda ws: format_sheet(ws, "595959"),
+    "shipments":    lambda ws: format_shipment_sheet(ws),
+    "site_summary": lambda ws: format_sheet(ws, "1F4E79"),
+}
+
+
+def process_study(cursor, study):
+    today = date.today().strftime("%d-%b-%Y")
+    import_id    = get_latest_import_id(cursor, study)
+    print(f"  import_id = {import_id}")
+
+    df           = load_inventory(cursor, study, import_id)
+    shipments_df = load_shipments(cursor, study, import_id)
+
+    expired_df      = build_expired(df)
+    assigned_df     = build_assigned_not_dispensed(df)
+    not_returned_df = build_not_returned(df)
+    destruction_df  = build_kits_for_destruction(df)
+    site_summ_df    = build_site_summary(shipments_df)
+
+    return [
+        df, expired_df, assigned_df, not_returned_df,
+        destruction_df, shipments_df, site_summ_df,
+    ]
+
+
+def save_study_report(study, data_frames):
+    output_file = OUTPUT_DIR / f"{date.today().strftime('%Y-%m-%d')} {study} report.xlsx"
+
+    with pd.ExcelWriter(output_file, engine="openpyxl") as writer:
+        for (sheet_name, _), df_sheet in zip(SHEETS_DEF, data_frames):
+            df_sheet.to_excel(writer, index=False, sheet_name=sheet_name)
+
+    wb = load_workbook(output_file)
+    for (sheet_name, fmt_key) in SHEETS_DEF:
+        FORMAT_MAP[fmt_key](wb[sheet_name])
+    wb.save(output_file)
+    print(f"  Uloženo: {output_file}")
+
+
+def main():
+    OUTPUT_DIR.mkdir(exist_ok=True)
+
+    conn   = get_conn()
+    cursor = conn.cursor(dictionary=True)
+
+    for study, _ in STUDIES:
+        print(f"\n{'='*55}")
+        print(f"[{study}]")
+        print(f"{'='*55}")
+        try:
+            data_frames = process_study(cursor, study)
+            save_study_report(study, data_frames)
+        except Exception as e:
+            import traceback
+            print(f"  CHYBA: {e}")
+            traceback.print_exc()
+
+    cursor.close()
+    conn.close()
+    print(f"\nHotovo.")
+
+
+if __name__ == "__main__":
+    main()