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IWRS/Patients/download_patients.py

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+"""
+download_patients.py — stažení pacientských reportů pro jednu studii.
+Verze: 1.0 | Datum: 2026-06-10
+
+Volá se z IWRS/run_all_v1.0.py s již přihlášenou Playwright page (login +
+výběr studie zajišťuje common.iwrs_portal.login).
+
+  1. Subject Summary Report
+  2. Subject Detail Reports + notifikace PDF+JSON (per subjekt, jen nové dle pk v Mongo)
+
+Vše se ukládá ploše do IWRS/Incoming/ s datumovanými názvy.
+"""
+
+import os
+import sys
+import datetime
+
+BASE_DIR = os.path.dirname(os.path.abspath(__file__))
+IWRS_DIR = os.path.dirname(BASE_DIR)
+for _p in (IWRS_DIR, BASE_DIR):
+    if _p not in sys.path:
+        sys.path.insert(0, _p)
+
+from common.iwrs_portal import BASE_URL
+from common.paths import INCOMING_DIR, unique_path
+
+import download_subject_details as dsd
+
+
+def download_summary(page, study, today):
+    print(f"  [{study}] Stahuji Subject Summary Report...")
+    page.goto(f"{BASE_URL}/report/patient_summary_report")
+    page.wait_for_load_state("networkidle", timeout=120000)
+    filename = unique_path(INCOMING_DIR, f"{today} {study} Subject Summary Report")
+    with page.expect_download(timeout=120000) as dl:
+        page.get_by_role("button", name="Download XLS").click()
+    dl.value.save_as(filename)
+    print(f"  [{study}] Summary OK -> {os.path.basename(filename)}")
+    return filename
+
+
+def run(page, study):
+    """Stáhne summary + detaily + notifikace pro studii do IWRS/Incoming/."""
+    os.makedirs(INCOMING_DIR, exist_ok=True)
+    today = datetime.date.today().strftime("%Y-%m-%d")
+    download_summary(page, study, today)
+    # detail XLSX + notifikace přímo do Incoming/ (flat názvy se study+subject)
+    dsd.run(page, study, out_dir=INCOMING_DIR, subjects_source_dir=INCOMING_DIR)

IWRS/Patients/import_patients.py

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+"""
+import_patients.py — import pacientských reportů z IWRS/Incoming/ do MongoDB.
+Verze: 1.0 | Datum: 2026-06-10
+
+Pořadí zpracování per typ + studie: nejstarší soubor podle mtime první
+(důležité pro chronologickou správnost snapshotů).
+
+Po úspěšném importu se soubor přesune do IWRS/Incoming/Processed/.
+Při chybě zůstane soubor v Incoming/.
+
+Volá se z IWRS/run_all_v1.0.py (ensure_indexes volá orchestrátor);
+lze spustit i samostatně: python import_patients.py
+"""
+
+import os
+import sys
+import glob
+
+BASE_DIR = os.path.dirname(os.path.abspath(__file__))
+IWRS_DIR = os.path.dirname(BASE_DIR)
+for _p in (IWRS_DIR, BASE_DIR):
+    if _p not in sys.path:
+        sys.path.insert(0, _p)
+
+from common.paths import INCOMING_DIR, PROCESSED_DIR, STUDIES, move_done, sorted_by_mtime
+from common.mongo_writer import ensure_indexes
+
+import import_to_mongo
+import import_notifications_to_mongo
+
+
+def import_summaries(study):
+    pattern = os.path.join(INCOMING_DIR, f"* {study} Subject Summary Report*.xlsx")
+    files = sorted_by_mtime(glob.glob(pattern))
+    if not files:
+        print(f"  [{study}] summary: nic ke zpracování")
+        return
+    print(f"  [{study}] summary: {len(files)} soubor(ů) (oldest first)")
+    for path in files:
+        try:
+            import_to_mongo.import_subject_summary(study, path)
+            move_done(path)
+        except Exception as e:
+            print(f"  [{study}] CHYBA summary {os.path.basename(path)}: {e}")
+
+
+def import_details(study):
+    pattern = os.path.join(INCOMING_DIR, f"* {study} * Subject Detail.xlsx")
+    files = sorted_by_mtime(glob.glob(pattern))
+    if not files:
+        print(f"  [{study}] detail: nic ke zpracování")
+        return
+    print(f"  [{study}] detail: {len(files)} soubor(ů) (oldest first)")
+    for path in files:
+        parsed = import_to_mongo.parse_detail_filename(path)
+        if not parsed:
+            print(f"  [{study}] PŘESKAKUJI (nelze parsovat název): {os.path.basename(path)}")
+            continue
+        _, parsed_study, subject = parsed
+        if parsed_study != study:
+            continue  # patří jiné studii
+        try:
+            import_to_mongo.import_visits_single_file(study, subject, path)
+            move_done(path)
+        except Exception as e:
+            print(f"  [{study}] CHYBA detail {os.path.basename(path)}: {e}")
+
+
+def run(studies=None):
+    studies = studies or STUDIES
+    if not os.path.isdir(INCOMING_DIR):
+        print(f"Adresář neexistuje: {INCOMING_DIR}")
+        return
+
+    print("=" * 60)
+    print("Import Subject Summary + Visits")
+    print("=" * 60)
+    for study in studies:
+        import_summaries(study)
+        import_details(study)
+
+    print("\n" + "=" * 60)
+    print("Import notifikací")
+    print("=" * 60)
+    import_notifications_to_mongo.import_from_dir(INCOMING_DIR, PROCESSED_DIR, studies)
+
+
+if __name__ == "__main__":
+    ensure_indexes()
+    run()